Pairwise Alignments

Query, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 52 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score = 52.4 bits (124), Expect = 2e-12
 Identities = 23/44 (52%), Positives = 26/44 (59%)

Query: 132 CVACGVCVPECPVDAISIEDIAVIDTDKCIYCTVCSQTCPWNAI 175
           CV C  CVP CPV AIS+   A ID + C  C VC   CP +AI
Sbjct: 7   CVGCAGCVPFCPVGAISVFGKAEIDMEMCTNCAVCKDYCPLDAI 50



 Score = 41.2 bits (95), Expect = 6e-09
 Identities = 25/58 (43%), Positives = 27/58 (46%), Gaps = 13/58 (22%)

Query: 91  CVLCEKCVEICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPECPVDAIS 148
           CV C  CV  CP   IS+ GKAE       I  E       C  C VC   CP+DAIS
Sbjct: 7   CVGCAGCVPFCPVGAISVFGKAE-------IDMEM------CTNCAVCKDYCPLDAIS 51



 Score = 39.7 bits (91), Expect = 2e-08
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 197 EECIGCEKCVEACPGSMIEYNGEKLGVKLPEACPACGLCVESCPVEVIS 245
           ++C+GC  CV  CP   I   G K  + + E C  C +C + CP++ IS
Sbjct: 5   DKCVGCAGCVPFCPVGAISVFG-KAEIDM-EMCTNCAVCKDYCPLDAIS 51



 Score = 37.4 bits (85), Expect = 8e-08
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 9/49 (18%)

Query: 308 CIRCGACAMKCPTGALKMGKMVHEGKEYARVEFSPALCNECGECVDVCP 356
           C+ C  C   CP GA+ +         + + E    +C  C  C D CP
Sbjct: 7   CVGCAGCVPFCPVGAISV---------FGKAEIDMEMCTNCAVCKDYCP 46



 Score = 35.4 bits (80), Expect = 3e-07
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 11/53 (20%)

Query: 158 DKCIYCTVCSQTCPWNAIFVAGKLPQKRQKTIKSFTVNEEECIGCEKCVEACP 210
           DKC+ C  C   CP  AI V GK             ++ E C  C  C + CP
Sbjct: 5   DKCVGCAGCVPFCPVGAISVFGKA-----------EIDMEMCTNCAVCKDYCP 46



 Score = 35.0 bits (79), Expect = 4e-07
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 12/58 (20%)

Query: 266 EKCAYCGPCAIKCPTGAIKVVNPKGLELPSKKKTEKANEFAMCIRCGACAMKCPTGAL 323
           +KC  C  C   CP GAI V     +++             MC  C  C   CP  A+
Sbjct: 5   DKCVGCAGCVPFCPVGAISVFGKAEIDM------------EMCTNCAVCKDYCPLDAI 50



 Score = 32.7 bits (73), Expect = 2e-06
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 5/48 (10%)

Query: 9  DACLVCNACAKACPTEAIEI-----APFKTCIQCFSCATACPTGALVE 51
          D C+ C  C   CP  AI +        + C  C  C   CP  A+ E
Sbjct: 5  DKCVGCAGCVPFCPVGAISVFGKAEIDMEMCTNCAVCKDYCPLDAISE 52



 Score = 30.4 bits (67), Expect = 1e-05
 Identities = 15/46 (32%), Positives = 18/46 (39%)

Query: 62  KCDLDGACQKACPVGIKKVDDRFPYSKGHCVLCEKCVEICPAEIIS 107
           KC     C   CPVG   V  +       C  C  C + CP + IS
Sbjct: 6   KCVGCAGCVPFCPVGAISVFGKAEIDMEMCTNCAVCKDYCPLDAIS 51



 Score = 30.0 bits (66), Expect = 1e-05
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 34 CIQCFSCATACPTGALVEKDGKLVFNGSKCDLDGACQKACPV 75
          C+ C  C   CP GA +   GK   +   C     C+  CP+
Sbjct: 7  CVGCAGCVPFCPVGA-ISVFGKAEIDMEMCTNCAVCKDYCPL 47



 Score = 29.3 bits (64), Expect = 2e-05
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 11/61 (18%)

Query: 223 VKLPEACPACGLCVESCPVEVISLEVEYASAKPVTDEGLVWSEEKCAYCGPCAIKCPTGA 282
           +++ + C  C  CV  CPV  IS+   +  A+           E C  C  C   CP  A
Sbjct: 1   MEILDKCVGCAGCVPFCPVGAISV---FGKAE--------IDMEMCTNCAVCKDYCPLDA 49

Query: 283 I 283
           I
Sbjct: 50  I 50



 Score = 26.6 bits (57), Expect = 1e-04
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 345 CNECGECVDVCPQKTLELTGDDKMPLKGYCVMCLKCIEAC 384
           C  C  CV  CP   + + G  ++ ++  C  C  C + C
Sbjct: 7   CVGCAGCVPFCPVGAISVFGKAEIDME-MCTNCAVCKDYC 45