Pairwise Alignments
Query, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2
Subject, 481 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ
Score = 141 bits (356), Expect = 4e-38
Identities = 112/397 (28%), Positives = 162/397 (40%), Gaps = 85/397 (21%)
Query: 23 TEAIEIAPFKTCIQCFS-----CATACPTGALVEKDGKLVFNGSKCDLDGACQKACPVGI 77
T+ + ++ C C S C CPT A+ DGK C G C K CP G
Sbjct: 4 TDIKKCRTYEECENCKSKEISKCMEVCPTNAIKMIDGK----AFSCITCGTCAKECPTGA 59
Query: 78 KKVDDRFPY--SKGHCVLCEKCVEICPAEIISL----PGKAEKPKKEIIIPQEPIAVTKD 131
K ++ Y ++ C C C CP +II + GKA T
Sbjct: 60 IKKNEYGGYYVNRKLCTGCGICKNACPIDIIDIREDSTGKAYP--------------TGM 105
Query: 132 CVACGVCVPECPVDAISIEDIAVIDTDKCIYCTVCSQTCPWNAIF-VAGKL----PQKRQ 186
CV CG+C ECP +A D + + K ++ IF + GK QK
Sbjct: 106 CVMCGLCTTECPYNARLYFDPSSLKNTKNKMLME-----RYSTIFKMMGKTYEFPEQKHV 160
Query: 187 KTIK--------SFTVNEEECIGCEKCVEACPGSMIEYNGEKLGVKLPEACPACGLCVES 238
K +K S +++ E+C+ C KC+ CP I + ++ + C C +C E
Sbjct: 161 KIVKPTERMLRHSISIDSEKCVECGKCIYVCPKDTI------IEAEIVDGCTRCNICNEV 214
Query: 239 CPVEVISLEVEYASAKPVTDEGLVWSEEKCAYCGPCAIKCPTGAIKVVNPKGLELPSKKK 298
CPV+ I +Y E C CG C KCP A+++ ++ K+
Sbjct: 215 CPVDAI----KYGEV-----------TENCILCGNCISKCPKDALEI---SEFKVVKTKE 256
Query: 299 TEKANEFAMCIRCGACAMKCPTGALKMGKMVHEGKEYARVEFSPALCNECGECVDVCPQK 358
KAN CI CG C KCP+ AL+ E ++ + P C C CV CPQ
Sbjct: 257 DVKANPEKHCINCGLCVDKCPSNALRF--------ENGKILYDPKTCTLCNTCVKECPQG 308
Query: 359 TLELTGDDKMPLKGYCVMCLKCIEACNKTKKEALSLK 395
G + G CV+C CI+ C ++A+S+K
Sbjct: 309 VRINKGGF---VDGGCVLCEVCIKEC---PEDAISIK 339
Score = 139 bits (351), Expect = 1e-37
Identities = 113/448 (25%), Positives = 168/448 (37%), Gaps = 114/448 (25%)
Query: 10 ACLVCNACAKACPTEAIEIAPF-------KTCIQCFSCATACPTGAL---VEKDGKLVFN 59
+C+ C CAK CPT AI+ + K C C C ACP + + GK
Sbjct: 44 SCITCGTCAKECPTGAIKKNEYGGYYVNRKLCTGCGICKNACPIDIIDIREDSTGKAYPT 103
Query: 60 GSKCDLDGACQKACPVGIKKVDD---------------------------RFPYSK---- 88
G C + G C CP + D FP K
Sbjct: 104 G-MCVMCGLCTTECPYNARLYFDPSSLKNTKNKMLMERYSTIFKMMGKTYEFPEQKHVKI 162
Query: 89 ----------------GHCVLCEKCVEICPAEII----SLPGKAEKPKKEIIIPQEPI-- 126
CV C KC+ +CP + I + G + P + I
Sbjct: 163 VKPTERMLRHSISIDSEKCVECGKCIYVCPKDTIIEAEIVDGCTRCNICNEVCPVDAIKY 222
Query: 127 -AVTKDCVACGVCVPECPVDAISIEDIAVIDTDK---------CIYCTVCSQTCPWNAI- 175
VT++C+ CG C+ +CP DA+ I + V+ T + CI C +C CP NA+
Sbjct: 223 GEVTENCILCGNCISKCPKDALEISEFKVVKTKEDVKANPEKHCINCGLCVDKCPSNALR 282
Query: 176 FVAGK-LPQKRQKTIKSFTVNE--------------EECIGCEKCVEACPGSMIEYNGEK 220
F GK L + T+ + V E C+ CE C++ CP I
Sbjct: 283 FENGKILYDPKTCTLCNTCVKECPQGVRINKGGFVDGGCVLCEVCIKECPEDAISIKERS 342
Query: 221 LGVKL-PEACPACGLCVESCPVEVISLEVEYASAKPVTDEGLVWSEEKCAYCGPCAIKCP 279
+ + C ACG C CP + I+++++ + V + C C CAI CP
Sbjct: 343 KFTSIDKKECIACGTCSMVCPNDAITVKIDSLNFSGNKVHSEVIFNDNCVLCEKCAIHCP 402
Query: 280 TGAIKVVNPKGLELPSKKKTEKANEF-----AMCIRCGACAMKCPTGALKMGKMVHEGKE 334
I+ N G KK + N + C++CG C + CP A+ G++ E E
Sbjct: 403 RDVIE--NTSGY----KKVVDPENSYIRVDDGYCVKCGLCTIICPNDAIDKGEITTERCE 456
Query: 335 YARVEFSPALCNECGECVDVCPQKTLEL 362
Y C CV++CP + + +
Sbjct: 457 Y------------CSACVNICPTRAIRI 472
Score = 120 bits (300), Expect = 1e-31
Identities = 77/287 (26%), Positives = 114/287 (39%), Gaps = 66/287 (22%)
Query: 9 DACLVCNACAKACPTEAI------------------------EIAPFKT----------- 33
D C CN C + CP +AI EI+ FK
Sbjct: 203 DGCTRCNICNEVCPVDAIKYGEVTENCILCGNCISKCPKDALEISEFKVVKTKEDVKANP 262
Query: 34 ---CIQCFSCATACPTGALVEKDGKLVFNGSKCDLDGACQKACPVGIKKVDDRFPYSKGH 90
CI C C CP+ AL ++GK++++ C L C K CP G++ ++ + G
Sbjct: 263 EKHCINCGLCVDKCPSNALRFENGKILYDPKTCTLCNTCVKECPQGVR--INKGGFVDGG 320
Query: 91 CVLCEKCVEICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPECPVDAISIE 150
CVLCE C++ CP + IS+ +++ + K+C+ACG C CP DAI+++
Sbjct: 321 CVLCEVCIKECPEDAISIKERSKFTSID----------KKECIACGTCSMVCPNDAITVK 370
Query: 151 -----------DIAVIDTDKCIYCTVCSQTCPWNAIFVAGKLPQKRQKTIKSFTVNEEEC 199
VI D C+ C C+ CP + I + V++ C
Sbjct: 371 IDSLNFSGNKVHSEVIFNDNCVLCEKCAIHCPRDVIENTSGYKKVVDPENSYIRVDDGYC 430
Query: 200 IGCEKCVEACPGSMIEYNGEKLGVKLPEACPACGLCVESCPVEVISL 246
+ C C CP I+ G E C C CV CP I +
Sbjct: 431 VKCGLCTIICPNDAID-----KGEITTERCEYCSACVNICPTRAIRI 472
Score = 92.4 bits (228), Expect = 2e-23
Identities = 56/178 (31%), Positives = 78/178 (43%), Gaps = 35/178 (19%)
Query: 8 EDACLVCNACAKACPTEAIEI--------APFKTCIQCFSCATACPTGALVEKDGKLVFN 59
+ C++C C K CP +AI I K CI C +C+ CP A+ K L F+
Sbjct: 318 DGGCVLCEVCIKECPEDAISIKERSKFTSIDKKECIACGTCSMVCPNDAITVKIDSLNFS 377
Query: 60 GSKCDLDGACQKACPVGIKKVDDRFPYSKGHCVLCEKCVEICPAEIISLPGKAEKPKKEI 119
G+K + +CVLCEKC CP ++I + K++
Sbjct: 378 GNKVHSE------------------VIFNDNCVLCEKCAIHCPRDVI----ENTSGYKKV 415
Query: 120 IIPQEPIAVTKD--CVACGVCVPECPVDAISIEDIAVIDTDKCIYCTVCSQTCPWNAI 175
+ P+ D CV CG+C CP DAI D I T++C YC+ C CP AI
Sbjct: 416 VDPENSYIRVDDGYCVKCGLCTIICPNDAI---DKGEITTERCEYCSACVNICPTRAI 470
Score = 68.2 bits (165), Expect = 5e-16
Identities = 44/136 (32%), Positives = 56/136 (41%), Gaps = 29/136 (21%)
Query: 256 VTDEGLVWSEEKCAYC-----GPCAIKCPTGAIKVVNPKGLELPSKKKTEKANEFAMCIR 310
VTD + E+C C C CPT AIK+++ K CI
Sbjct: 3 VTDIKKCRTYEECENCKSKEISKCMEVCPTNAIKMIDGKAFS---------------CIT 47
Query: 311 CGACAMKCPTGALKMGKMVHEGKEYARVEFSPALCNECGECVDVCPQKTLELTGDD--KM 368
CG CA +CPTGA+K EY + LC CG C + CP +++ D K
Sbjct: 48 CGTCAKECPTGAIKK-------NEYGGYYVNRKLCTGCGICKNACPIDIIDIREDSTGKA 100
Query: 369 PLKGYCVMCLKCIEAC 384
G CVMC C C
Sbjct: 101 YPTGMCVMCGLCTTEC 116