Pairwise Alignments

Query, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 205 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score = 92.0 bits (227), Expect = 1e-23
 Identities = 61/178 (34%), Positives = 79/178 (44%), Gaps = 22/178 (12%)

Query: 34  CIQCFSCATACPTGALVEKDGKLVFNGSKCDLDGACQKACPV-GIKKVDDRFPYSKGHCV 92
           CI C  C   CPT A+        F    C+  GAC   CPV  I+K  +RF      C+
Sbjct: 46  CICCGLCVDVCPTNAI----SVFKFRDIICEHCGACLNVCPVDAIEK--NRFSVDSEKCI 99

Query: 93  LCEKCVEICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPECPVDAISIEDI 152
            C  C   C   I+         K EI +   P  VT +C  C +C+ +CP  AIS ED 
Sbjct: 100 KCGVCSIFCTIPIL---------KNEIPVLNVP-EVTNECNNCKLCIQKCPQKAISFEDG 149

Query: 153 AVIDTDKCIYCTVCSQTCPWNAIFVAGKLPQKRQKTIKSFTVNEEECIGCEKCVEACP 210
            +    KC  C  C + CP NA+    K P+   K+ K   V+   CI C+ C E CP
Sbjct: 150 KISINSKCNLCLKCVEFCPLNAL----KSPKDSLKS-KIIKVDLNSCIFCKDCEEICP 202



 Score = 82.4 bits (202), Expect = 1e-20
 Identities = 59/191 (30%), Positives = 84/191 (43%), Gaps = 33/191 (17%)

Query: 130 KDCVACGVCVPECPVDAISIEDIAVIDTDKCIYCTVCSQTCPWNAIFVAGKLPQKRQKTI 189
           +DC+ CG+CV  CP +AIS+     I    C +C  C   CP +AI       +K +   
Sbjct: 44  EDCICCGLCVDVCPTNAISVFKFRDI---ICEHCGACLNVCPVDAI-------EKNR--- 90

Query: 190 KSFTVNEEECIGCEKCVEACPGSMIEYNGEKLGV-KLPEACPACGLCVESCPVEVISLEV 248
             F+V+ E+CI C  C   C   +++     L V ++   C  C LC++ CP + IS E 
Sbjct: 91  --FSVDSEKCIKCGVCSIFCTIPILKNEIPVLNVPEVTNECNNCKLCIQKCPQKAISFE- 147

Query: 249 EYASAKPVTDEGLVWSEEKCAYCGPCAIKCPTGAIKVVNPKGLELPSKKKTEKANEFAMC 308
                     +G +    KC  C  C   CP  A+K  +PK      K K  K  +   C
Sbjct: 148 ----------DGKISINSKCNLCLKCVEFCPLNALK--SPKD---SLKSKIIKV-DLNSC 191

Query: 309 IRCGACAMKCP 319
           I C  C   CP
Sbjct: 192 IFCKDCEEICP 202



 Score = 78.6 bits (192), Expect = 1e-19
 Identities = 56/183 (30%), Positives = 74/183 (40%), Gaps = 37/183 (20%)

Query: 215 EYNGEKLGVKLPEACPACGLCVESCPVEVISLEVEYASAKPVTDEGLVWSEEKCAYCGPC 274
           E  GE    +L E C  CGLCV+ CP   IS+                + +  C +CG C
Sbjct: 33  EIIGETTNPEL-EDCICCGLCVDVCPTNAISV--------------FKFRDIICEHCGAC 77

Query: 275 AIKCPTGAIKVVNPKGLELPSKKKTEKANEFAMCIRCGACAMKCPTGALKMGKMVHEGKE 334
              CP  AI+             K   + +   CI+CG C++ C    LK    V    E
Sbjct: 78  LNVCPVDAIE-------------KNRFSVDSEKCIKCGVCSIFCTIPILKNEIPVLNVPE 124

Query: 335 YARVEFSPALCNECGECVDVCPQKTLELTGDDKMPLKGYCVMCLKCIEAC--NKTKKEAL 392
                     CN C  C+  CPQK +    D K+ +   C +CLKC+E C  N  K    
Sbjct: 125 VTNE------CNNCKLCIQKCPQKAISFE-DGKISINSKCNLCLKCVEFCPLNALKSPKD 177

Query: 393 SLK 395
           SLK
Sbjct: 178 SLK 180



 Score = 73.6 bits (179), Expect = 5e-18
 Identities = 57/203 (28%), Positives = 80/203 (39%), Gaps = 40/203 (19%)

Query: 156 DTDKCIYCTVCSQTCPWNAIFVAGKLPQKRQKTIKSFTVNEEECIGCEKCVEACPGSMIE 215
           + + CI C +C   CP NAI V              F   +  C  C  C+  CP   IE
Sbjct: 42  ELEDCICCGLCVDVCPTNAISV--------------FKFRDIICEHCGACLNVCPVDAIE 87

Query: 216 YNGEKLGVKLPEACPACGLCVESCPVEVISLEVEYASAKPVTDEGLVWSEEKCAYCGPCA 275
            N   +     E C  CG+C   C + ++  E+   +   VT+E        C  C  C 
Sbjct: 88  KNRFSVD---SEKCIKCGVCSIFCTIPILKNEIPVLNVPEVTNE--------CNNCKLCI 136

Query: 276 IKCPTGAIKVVNPKGLELPSKKKTEKANEFAMCIRCGACAMKCPTGALKMGKMVHEGKEY 335
            KCP  AI   + K + + SK           C  C  C   CP  ALK  K   + K  
Sbjct: 137 QKCPQKAISFEDGK-ISINSK-----------CNLCLKCVEFCPLNALKSPKDSLKSK-I 183

Query: 336 ARVEFSPALCNECGECVDVCPQK 358
            +V+ +   C  C +C ++CP K
Sbjct: 184 IKVDLNS--CIFCKDCEEICPVK 204



 Score = 58.2 bits (139), Expect = 2e-13
 Identities = 44/142 (30%), Positives = 58/142 (40%), Gaps = 17/142 (11%)

Query: 11  CLVCNACAKACPTEAIEIAPF----KTCIQCFSCATACPTGALVEKDGKLVFN----GSK 62
           C  C AC   CP +AIE   F    + CI+C  C+  C    L  K+   V N     ++
Sbjct: 71  CEHCGACLNVCPVDAIEKNRFSVDSEKCIKCGVCSIFCTIPIL--KNEIPVLNVPEVTNE 128

Query: 63  CDLDGACQKACPVGIKKVDDRFPYSKGHCVLCEKCVEICPAEIISLPGKAEKPKKEIIIP 122
           C+    C + CP      +D        C LC KCVE CP   +  P  + K K   II 
Sbjct: 129 CNNCKLCIQKCPQKAISFEDGKISINSKCNLCLKCVEFCPLNALKSPKDSLKSK---IIK 185

Query: 123 QEPIAVTKDCVACGVCVPECPV 144
            +       C+ C  C   CPV
Sbjct: 186 VD----LNSCIFCKDCEEICPV 203



 Score = 54.3 bits (129), Expect = 3e-12
 Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 15/114 (13%)

Query: 5   SIQEDACLVCNACAKAC--PTEAIEIAPFKT------CIQCFSCATACPTGALVEKDGKL 56
           S+  + C+ C  C+  C  P    EI           C  C  C   CP  A+  +DGK+
Sbjct: 92  SVDSEKCIKCGVCSIFCTIPILKNEIPVLNVPEVTNECNNCKLCIQKCPQKAISFEDGKI 151

Query: 57  VFNGSKCDLDGACQKACPVGIKKVDDRFPYSK------GHCVLCEKCVEICPAE 104
             N SKC+L   C + CP+   K       SK        C+ C+ C EICP +
Sbjct: 152 SIN-SKCNLCLKCVEFCPLNALKSPKDSLKSKIIKVDLNSCIFCKDCEEICPVK 204



 Score = 23.1 bits (48), Expect = 0.007
 Identities = 6/21 (28%), Positives = 12/21 (57%)

Query: 4   ISIQEDACLVCNACAKACPTE 24
           I +  ++C+ C  C + CP +
Sbjct: 184 IKVDLNSCIFCKDCEEICPVK 204