Pairwise Alignments

Query, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 161 a.a., ferredoxin-type protein NapF (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 58.9 bits (141), Expect = 9e-14
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 11/134 (8%)

Query: 123 QEPIAVTKDCVACGVCVPECPVDAI-----SIEDIAVIDTDKCIYCTVCSQTCPWNAIFV 177
           +E +  T  C  C  C+  C    I        +I+  D + C +C  C+  CP   +F 
Sbjct: 27  REEVEFTDVCTRCSACITACETKIIFKGDGGFPEISFKDNE-CTFCAQCATICPEEKLFD 85

Query: 178 AGKLPQKRQKTIKSFTVNEEECIGCEKCVEACPGSMIEYNGEKLGVKLPEA----CPACG 233
             + P + Q  I+   +  +  I C+ C +AC    I +        +P+     C  CG
Sbjct: 86  LSQTPWQHQAVIQDNCLTFQG-IWCQSCKDACEPRAIGFTLSVGQAPMPKIDTSLCTGCG 144

Query: 234 LCVESCPVEVISLE 247
            CV  CP + IS++
Sbjct: 145 ACVAPCPSQAISIK 158



 Score = 52.8 bits (125), Expect = 7e-12
 Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 30/135 (22%)

Query: 34  CIQCFSCATACPTGALVEKDG---KLVFNGSKCDLDGACQKACPVGIKKVDD--RFPYS- 87
           C +C +C TAC T  + + DG   ++ F  ++C     C   CP   +K+ D  + P+  
Sbjct: 36  CTRCSACITACETKIIFKGDGGFPEISFKDNECTFCAQCATICPE--EKLFDLSQTPWQH 93

Query: 88  ----KGHC-----VLCEKCVEICPAEIISLP---GKAEKPKKEIIIPQEPIAVTKDCVAC 135
               + +C     + C+ C + C    I      G+A  PK +          T  C  C
Sbjct: 94  QAVIQDNCLTFQGIWCQSCKDACEPRAIGFTLSVGQAPMPKID----------TSLCTGC 143

Query: 136 GVCVPECPVDAISIE 150
           G CV  CP  AISI+
Sbjct: 144 GACVAPCPSQAISIK 158



 Score = 47.0 bits (110), Expect = 4e-10
 Identities = 41/128 (32%), Positives = 52/128 (40%), Gaps = 32/128 (25%)

Query: 9   DACLVCNACAKACPTEAI--------EIAPFK--TCIQCFSCATACPTGAL--------- 49
           D C  C+AC  AC T+ I        EI+ FK   C  C  CAT CP   L         
Sbjct: 34  DVCTRCSACITACETKIIFKGDGGFPEIS-FKDNECTFCAQCATICPEEKLFDLSQTPWQ 92

Query: 50  ---VEKDGKLVFNGSKCDLDGACQKAC---PVGIKKVDDRFPYSK---GHCVLCEKCVEI 100
              V +D  L F G  C    +C+ AC    +G      + P  K     C  C  CV  
Sbjct: 93  HQAVIQDNCLTFQGIWCQ---SCKDACEPRAIGFTLSVGQAPMPKIDTSLCTGCGACVAP 149

Query: 101 CPAEIISL 108
           CP++ IS+
Sbjct: 150 CPSQAISI 157



 Score = 40.0 bits (92), Expect = 4e-08
 Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 28/148 (18%)

Query: 223 VKLPEACPACGLCVESCPVEVISLEVEYASAKPVTDEG---LVWSEEKCAYCGPCAIKCP 279
           V+  + C  C  C+ +C  ++I             D G   + + + +C +C  CA  CP
Sbjct: 30  VEFTDVCTRCSACITACETKIIFKG----------DGGFPEISFKDNECTFCAQCATICP 79

Query: 280 TGAIKVVNPKGLELPSKKKTEKANEFAMCIR-----CGACAMKCPTGALKMGKMVHEGKE 334
                    K  +L       +A     C+      C +C   C   A+     V +   
Sbjct: 80  -------EEKLFDLSQTPWQHQAVIQDNCLTFQGIWCQSCKDACEPRAIGFTLSVGQAP- 131

Query: 335 YARVEFSPALCNECGECVDVCPQKTLEL 362
               +   +LC  CG CV  CP + + +
Sbjct: 132 --MPKIDTSLCTGCGACVAPCPSQAISI 157



 Score = 39.3 bits (90), Expect = 8e-08
 Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 17/133 (12%)

Query: 199 CIGCEKCVEACPGSMIEYNGE----KLGVKLPEACPACGLCVESCPVEVIS--LEVEYAS 252
           C  C  C+ AC   +I + G+    ++  K  E C  C  C   CP E +    +  +  
Sbjct: 36  CTRCSACITACETKII-FKGDGGFPEISFKDNE-CTFCAQCATICPEEKLFDLSQTPWQH 93

Query: 253 AKPVTDEGLVWSEEKCAYCGPCAIKCPTGAIKVVNPKGLELPSKKKTEKANEFAMCIRCG 312
              + D  L +      +C  C   C   AI      G  L   +      + ++C  CG
Sbjct: 94  QAVIQDNCLTFQG---IWCQSCKDACEPRAI------GFTLSVGQAPMPKIDTSLCTGCG 144

Query: 313 ACAMKCPTGALKM 325
           AC   CP+ A+ +
Sbjct: 145 ACVAPCPSQAISI 157



 Score = 26.9 bits (58), Expect = 4e-04
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 6   IQEDACLVCNACAKACPTEAIEI 28
           I    C  C AC   CP++AI I
Sbjct: 135 IDTSLCTGCGACVAPCPSQAISI 157