Pairwise Alignments

Query, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 295 a.a., NADH:quinone oxidoreductase subunit RnfB (Shelley Haveman) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 63.9 bits (154), Expect = 6e-15
 Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 11/124 (8%)

Query: 132 CVACGVCVPECPVDAISIED-IAVIDTDKCIYCTVCSQTCPWNAIFV------AGKLPQK 184
           C+  G CV  CP DA+ IE+ +  +D  KC  C VC   CP N + +         +   
Sbjct: 140 CLGLGDCVEVCPFDALHIENGLTHVDLAKCTGCGVCINACPRNTLELIPVRARVAVMCST 199

Query: 185 RQKTIKSFTVNEEECIGCEKCVEACPGSMIEYNGEKLGV---KLPEACPACG-LCVESCP 240
           ++K      V E  CI C KCV+ACP   I     ++ +   K     P C   CV +CP
Sbjct: 200 KEKLKAVMEVCEVGCINCGKCVKACPAHAISQETGRIEIDQKKCLSYGPDCNEACVTACP 259

Query: 241 VEVI 244
             ++
Sbjct: 260 RNIM 263



 Score = 53.5 bits (127), Expect = 7e-12
 Identities = 41/166 (24%), Positives = 66/166 (39%), Gaps = 33/166 (19%)

Query: 206 VEACPGSMIEYNGEKLGVKLPEACPACGLCVESCPVEVISLEVEYASAKPVTDEGLVWSE 265
           V +C  + + ++G         +C   G CVE CP + + +E            GL   +
Sbjct: 120 VPSCAAAALLFDGSD---SCSYSCLGLGDCVEVCPFDALHIE-----------NGLTHVD 165

Query: 266 -EKCAYCGPCAIKCPTGAIKVVNPKG---LELPSKKKTEKANEFAM--CIRCGACAMKCP 319
             KC  CG C   CP   ++++  +    +   +K+K +   E     CI CG C   CP
Sbjct: 166 LAKCTGCGVCINACPRNTLELIPVRARVAVMCSTKEKLKAVMEVCEVGCINCGKCVKACP 225

Query: 320 TGALKMGKMVHEGKEYARVEFSPALC----NECGE-CVDVCPQKTL 360
             A+         +E  R+E     C     +C E CV  CP+  +
Sbjct: 226 AHAI--------SQETGRIEIDQKKCLSYGPDCNEACVTACPRNIM 263



 Score = 49.3 bits (116), Expect = 1e-10
 Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 27/96 (28%)

Query: 11  CLVCNACAKACPTEAIEIAPFKT----------------------CIQCFSCATACPTGA 48
           C  C  C  ACP   +E+ P +                       CI C  C  ACP  A
Sbjct: 169 CTGCGVCINACPRNTLELIPVRARVAVMCSTKEKLKAVMEVCEVGCINCGKCVKACPAHA 228

Query: 49  LVEKDGKLVFNGSKC-----DLDGACQKACPVGIKK 79
           + ++ G++  +  KC     D + AC  ACP  I +
Sbjct: 229 ISQETGRIEIDQKKCLSYGPDCNEACVTACPRNIMR 264



 Score = 45.4 bits (106), Expect = 2e-09
 Identities = 39/143 (27%), Positives = 55/143 (38%), Gaps = 31/143 (21%)

Query: 10  ACLVCNACAKACPTEAIEI------APFKTCIQCFSCATACP--TGALVEKDGKLVFNGS 61
           +CL    C + CP +A+ I           C  C  C  ACP  T  L+    ++    S
Sbjct: 139 SCLGLGDCVEVCPFDALHIENGLTHVDLAKCTGCGVCINACPRNTLELIPVRARVAVMCS 198

Query: 62  KCDLDGACQKACPVGIKKVDDRFPYSKGHCVLCEKCVEICPAEIISL-PGKAEKPKKEII 120
             +   A  + C VG              C+ C KCV+ CPA  IS   G+ E  +K+  
Sbjct: 199 TKEKLKAVMEVCEVG--------------CINCGKCVKACPAHAISQETGRIEIDQKKC- 243

Query: 121 IPQEPIAVTKDCVACGVCVPECP 143
                ++   DC     CV  CP
Sbjct: 244 -----LSYGPDCNE--ACVTACP 259



 Score = 43.1 bits (100), Expect = 1e-08
 Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 24/93 (25%)

Query: 308 CIRCGACAMKCPTGALKMGKMVHEGKEYARVEFSPALCNECGECVDVCPQKTLELTG--- 364
           C+  G C   CP  AL +        E        A C  CG C++ CP+ TLEL     
Sbjct: 140 CLGLGDCVEVCPFDALHI--------ENGLTHVDLAKCTGCGVCINACPRNTLELIPVRA 191

Query: 365 ------DDKMPLKGY-------CVMCLKCIEAC 384
                   K  LK         C+ C KC++AC
Sbjct: 192 RVAVMCSTKEKLKAVMEVCEVGCINCGKCVKAC 224