Pairwise Alignments

Query, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 248 a.a., 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 59.7 bits (143), Expect = 9e-14
 Identities = 49/147 (33%), Positives = 62/147 (42%), Gaps = 20/147 (13%)

Query: 181 LPQKRQKTIKSFTVNEEECIGCEKCVEACPGSMIEYNGEKLGVKLPEACPACGLCVESCP 240
           LP   +K +    ++ + C+GC  CV AC G    +N +  G  L +  P       S  
Sbjct: 4   LPSHTEKKL-GLVIDLDTCVGCHACVVACKG----WNDQAYGAPLSDQDPYGADPTGSFL 58

Query: 241 VEVISLEVEYASAKPVTDEGLVWSEEKCAYC--GPCAIKCPTGAIKVVNPKGLELPSKKK 298
             V S EV  AS        LV   + C +C   PC   CPTGA       G+ L     
Sbjct: 59  NRVHSYEVTPASG----PAQLVHFPKSCLHCEDAPCVTVCPTGASYKRAEDGIVL----- 109

Query: 299 TEKANEFAMCIRCGACAMKCPTGALKM 325
               NE A CI CG CA  CP GA +M
Sbjct: 110 ---VNEDA-CIGCGLCAWACPYGAREM 132



 Score = 48.9 bits (115), Expect = 2e-10
 Identities = 43/158 (27%), Positives = 57/158 (36%), Gaps = 58/158 (36%)

Query: 3   GISIQEDACLVCNACAKAC---------------------PT-------EAIEIAPF--- 31
           G+ I  D C+ C+AC  AC                     PT        + E+ P    
Sbjct: 13  GLVIDLDTCVGCHACVVACKGWNDQAYGAPLSDQDPYGADPTGSFLNRVHSYEVTPASGP 72

Query: 32  -------KTCIQCFS--CATACPTGALVEK--DGKLVFNGSKCDLDGACQKACPVGIKKV 80
                  K+C+ C    C T CPTGA  ++  DG ++ N   C   G C  ACP G +++
Sbjct: 73  AQLVHFPKSCLHCEDAPCVTVCPTGASYKRAEDGIVLVNEDACIGCGLCAWACPYGAREM 132

Query: 81  DDRFPYSKGHCVLC---------------EKCVEICPA 103
           D      K  C LC                 CV  CPA
Sbjct: 133 DAAAGVMK-KCTLCVDRIYNEALPEEDRQPACVRTCPA 169



 Score = 39.3 bits (90), Expect = 1e-07
 Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 12/80 (15%)

Query: 4   ISIQEDACLVCNACAKACPTEAIEI-APFKTCIQCFSCATACPTGALVEKDGKLVFNGSK 62
           + + EDAC+ C  CA ACP  A E+ A      +C  C       AL E+D +       
Sbjct: 108 VLVNEDACIGCGLCAWACPYGAREMDAAAGVMKKCTLCVDRIYNEALPEEDRQ------- 160

Query: 63  CDLDGACQKACPVGIKKVDD 82
                AC + CP G +   D
Sbjct: 161 ----PACVRTCPAGARHFGD 176



 Score = 37.0 bits (84), Expect = 6e-07
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 122 PQEPIAVTKDCVAC--GVCVPECPVDAI---SIEDIAVIDTDKCIYCTVCSQTCPWNA 174
           P + +   K C+ C    CV  CP  A    + + I +++ D CI C +C+  CP+ A
Sbjct: 72  PAQLVHFPKSCLHCEDAPCVTVCPTGASYKRAEDGIVLVNEDACIGCGLCAWACPYGA 129



 Score = 33.1 bits (74), Expect = 9e-06
 Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 16/80 (20%)

Query: 160 CIYC--TVCSQTCPWNAIFVAGKLPQKRQKTIKSFTVNEEECIGCEKCVEACPGSMIEYN 217
           C++C    C   CP  A +        ++       VNE+ CIGC  C  ACP    E +
Sbjct: 82  CLHCEDAPCVTVCPTGASY--------KRAEDGIVLVNEDACIGCGLCAWACPYGAREMD 133

Query: 218 GEKLGVKLPEACPACGLCVE 237
                +K       C LCV+
Sbjct: 134 AAAGVMK------KCTLCVD 147