Pairwise Alignments
Query, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2
Subject, 293 a.a., Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfB (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482
Score = 69.7 bits (169), Expect = 1e-16
Identities = 49/177 (27%), Positives = 73/177 (41%), Gaps = 34/177 (19%)
Query: 16 ACAKACPTEAIEIAPFKTCIQCFSCATACPTGALVEKDGKLVFNGSKCDLDGACQKACPV 75
+CA A E C+ C C AC A+
Sbjct: 124 SCAIAASLYGGETGCSYGCLGCGDCVAACQFDAIHMNP--------------------ET 163
Query: 76 GIKKVDDRFPYSKGHCVLCEKCVEICPAEIISLPGKAEKPKKEII--IPQEPIAV----- 128
G+ +VD+ C C CV+ CP II + + +K ++ I + ++ AV
Sbjct: 164 GLPEVDE------AKCTACGACVKACPKAIIEIRPQGKKSRRVYISCVNKDKGAVARKAC 217
Query: 129 TKDCVACGVCVPECPVDAISIE-DIAVIDTDKCIYCTVCSQTCPWNAIFVAGKLPQK 184
T C+ CG CV CP +AI++E ++A ID +KC C C + CP N I P+K
Sbjct: 218 TVSCIGCGKCVKTCPFEAITLENNLAYIDPNKCKSCRKCVEVCPQNTIIELNFPPRK 274
Score = 65.5 bits (158), Expect = 2e-15
Identities = 43/141 (30%), Positives = 58/141 (41%), Gaps = 26/141 (18%)
Query: 229 CPACGLCVESCPVEVISLEVEYASAKPVTDEGLVWSEEKCAYCGPCAIKCPTGAIKVVNP 288
C CG CV +C + I + E + P DE KC CG C CP I++ P
Sbjct: 142 CLGCGDCVAACQFDAIHMNPE--TGLPEVDEA------KCTACGACVKACPKAIIEI-RP 192
Query: 289 KG-------LELPSKKKTEKANEFAM--CIRCGACAMKCPTGALKMGKMVHEGKEYARVE 339
+G + +K K A + CI CG C CP A+ + E
Sbjct: 193 QGKKSRRVYISCVNKDKGAVARKACTVSCIGCGKCVKTCPFEAITL--------ENNLAY 244
Query: 340 FSPALCNECGECVDVCPQKTL 360
P C C +CV+VCPQ T+
Sbjct: 245 IDPNKCKSCRKCVEVCPQNTI 265
Score = 65.1 bits (157), Expect = 2e-15
Identities = 65/248 (26%), Positives = 90/248 (36%), Gaps = 45/248 (18%)
Query: 3 GISIQEDACLVCNAC-AKACPTEAIEIAPFKTCIQCFSCATACPTGALVEKDGKLVFNGS 61
G S DAC+ + K CP + I + A P A+V +G
Sbjct: 56 GCSGFADACVKAGSLDGKFCPVGGQPVMAQIADILGLAATEAEPMVAVVRCNGSCANRPR 115
Query: 62 KCDLDGACQKACPVGIKKVDDRFPYSKGHCVLCEKCVEICPAEIISLPGKAEKPKKEIII 121
DGA K+C + S G C+ C CV C + I + + P+ +
Sbjct: 116 INQYDGA--KSCAIAASLYGGETGCSYG-CLGCGDCVAACQFDAIHMNPETGLPEVD--- 169
Query: 122 PQEPIAVTKDCVACGVCVPECPVDAISIED---------IAVIDTDK-----------CI 161
C ACG CV CP I I I+ ++ DK CI
Sbjct: 170 -------EAKCTACGACVKACPKAIIEIRPQGKKSRRVYISCVNKDKGAVARKACTVSCI 222
Query: 162 YCTVCSQTCPWNAIFVAGKLPQKRQKTIKSFTVNEEECIGCEKCVEACP-GSMIEYNGEK 220
C C +TCP+ AI + L ++ +C C KCVE CP ++IE N
Sbjct: 223 GCGKCVKTCPFEAITLENNLAY----------IDPNKCKSCRKCVEVCPQNTIIELNFPP 272
Query: 221 LGVKLPEA 228
K EA
Sbjct: 273 RKPKAEEA 280
Score = 64.7 bits (156), Expect = 3e-15
Identities = 48/177 (27%), Positives = 65/177 (36%), Gaps = 39/177 (22%)
Query: 132 CVACGVCVPECPVDAISIED---IAVIDTDKCIYCTVCSQTCPWNAIFVAGKLPQKRQKT 188
C+ CG CV C DAI + + +D KC C C + CP AI +K ++
Sbjct: 142 CLGCGDCVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACP-KAIIEIRPQGKKSRRV 200
Query: 189 IKSFTVNEEECIGCEKCVEACPGSMIEYNGEKLGVKLPEACPACGLCVESCPVEVISLEV 248
S ++ + + C +C G CG CV++CP E I+LE
Sbjct: 201 YISCVNKDKGAVARKACTVSCIG--------------------CGKCVKTCPFEAITLEN 240
Query: 249 EYASAKPVTDEGLVWSEEKCAYCGPCAIKCPTGAIKVVN-----PKGLELPSKKKTE 300
A P KC C C CP I +N PK E P E
Sbjct: 241 NLAYIDP----------NKCKSCRKCVEVCPQNTIIELNFPPRKPKAEEAPKTVAAE 287
Score = 53.9 bits (128), Expect = 6e-12
Identities = 36/131 (27%), Positives = 48/131 (36%), Gaps = 26/131 (19%)
Query: 268 CAYCGPCAIKCPTGAIKVVNPKGLELPSKKKTEKANEFAMCIRCGACAMKCPTGALKMGK 327
C CG C C AI + GL + K C CGAC CP +++
Sbjct: 142 CLGCGDCVAACQFDAIHMNPETGLPEVDEAK---------CTACGACVKACPKAIIEIRP 192
Query: 328 MVHEGKEYARVEFS--------------PALCNECGECVDVCPQKTLELTGDDKMPLKGY 373
+GK+ RV S C CG+CV CP + + L +
Sbjct: 193 ---QGKKSRRVYISCVNKDKGAVARKACTVSCIGCGKCVKTCPFEAITLENNLAYIDPNK 249
Query: 374 CVMCLKCIEAC 384
C C KC+E C
Sbjct: 250 CKSCRKCVEVC 260
Score = 31.6 bits (70), Expect = 3e-05
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 345 CNECGECVDVCPQKTLELTGDDKMPL--KGYCVMCLKCIEACNK 386
C CG+CV C + + + +P + C C C++AC K
Sbjct: 142 CLGCGDCVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACPK 185