Pairwise Alignments

Query, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 161 a.a., ferredoxin-type protein NapF (RefSeq) from Shewanella sp. ANA-3

 Score = 58.9 bits (141), Expect = 9e-14
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 11/134 (8%)

Query: 123 QEPIAVTKDCVACGVCVPECPVDAI-----SIEDIAVIDTDKCIYCTVCSQTCPWNAIFV 177
           +E I  T  C  C  C+  C    I        +++  D + C +C  C+  CP   +F 
Sbjct: 27  REGIEFTDICTRCTACITACETKIIYKGDGGFPEVSFKDNE-CTFCRRCASVCPEEKLFD 85

Query: 178 AGKLPQKRQKTIKSFTVNEEECIGCEKCVEACPGSMIEYNGEKLGVKLP----EACPACG 233
             + P + +  I+   +  +  I C+ C +AC    I +        +P    E C  CG
Sbjct: 86  LTQTPWQHKAVIQDNCLTYQG-IWCQSCKDACEPRAISFTLSVGNAPMPKIDSELCTGCG 144

Query: 234 LCVESCPVEVISLE 247
            CV  CP + IS++
Sbjct: 145 ACVAPCPSQAISIK 158



 Score = 53.1 bits (126), Expect = 5e-12
 Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 30/137 (21%)

Query: 34  CIQCFSCATACPTGALVEKDG---KLVFNGSKCDLDGACQKACPVGIKKVDD--RFPYS- 87
           C +C +C TAC T  + + DG   ++ F  ++C     C   CP   +K+ D  + P+  
Sbjct: 36  CTRCTACITACETKIIYKGDGGFPEVSFKDNECTFCRRCASVCPE--EKLFDLTQTPWQH 93

Query: 88  ----KGHC-----VLCEKCVEICPAEIISLP---GKAEKPKKEIIIPQEPIAVTKDCVAC 135
               + +C     + C+ C + C    IS     G A  PK +          ++ C  C
Sbjct: 94  KAVIQDNCLTYQGIWCQSCKDACEPRAISFTLSVGNAPMPKID----------SELCTGC 143

Query: 136 GVCVPECPVDAISIEDI 152
           G CV  CP  AISI+ +
Sbjct: 144 GACVAPCPSQAISIKPV 160



 Score = 40.8 bits (94), Expect = 3e-08
 Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 22/146 (15%)

Query: 222 GVKLPEACPACGLCVESCPVEVISLEVEYASAKPVTDEGLVWSEEKCAYCGPCAIKCPTG 281
           G++  + C  C  C+ +C  ++I     Y       +  + + + +C +C  CA  CP  
Sbjct: 29  GIEFTDICTRCTACITACETKII-----YKGDGGFPE--VSFKDNECTFCRRCASVCP-- 79

Query: 282 AIKVVNPKGLELPSKKKTEKANEFAMCIR-----CGACAMKCPTGALKMGKMVHEGKEYA 336
                  K  +L       KA     C+      C +C   C   A+     V       
Sbjct: 80  -----EEKLFDLTQTPWQHKAVIQDNCLTYQGIWCQSCKDACEPRAISFTLSVGNAP--- 131

Query: 337 RVEFSPALCNECGECVDVCPQKTLEL 362
             +    LC  CG CV  CP + + +
Sbjct: 132 MPKIDSELCTGCGACVAPCPSQAISI 157



 Score = 40.0 bits (92), Expect = 4e-08
 Identities = 34/133 (25%), Positives = 50/133 (37%), Gaps = 17/133 (12%)

Query: 199 CIGCEKCVEACPGSMIEYNGE----KLGVKLPEACPACGLCVESCPVEVIS--LEVEYAS 252
           C  C  C+ AC   +I Y G+    ++  K  E C  C  C   CP E +    +  +  
Sbjct: 36  CTRCTACITACETKII-YKGDGGFPEVSFKDNE-CTFCRRCASVCPEEKLFDLTQTPWQH 93

Query: 253 AKPVTDEGLVWSEEKCAYCGPCAIKCPTGAIKVVNPKGLELPSKKKTEKANEFAMCIRCG 312
              + D  L +      +C  C   C   AI      G     K  +E      +C  CG
Sbjct: 94  KAVIQDNCLTYQG---IWCQSCKDACEPRAISFTLSVGNAPMPKIDSE------LCTGCG 144

Query: 313 ACAMKCPTGALKM 325
           AC   CP+ A+ +
Sbjct: 145 ACVAPCPSQAISI 157



 Score = 30.4 bits (67), Expect = 4e-05
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 6   IQEDACLVCNACAKACPTEAIEIAP 30
           I  + C  C AC   CP++AI I P
Sbjct: 135 IDSELCTGCGACVAPCPSQAISIKP 159