Pairwise Alignments

Query, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 193 a.a., electron transport complex protein RnfB (RefSeq) from Shewanella sp. ANA-3

 Score = 58.5 bits (140), Expect = 1e-13
 Identities = 24/53 (45%), Positives = 32/53 (60%)

Query: 194 VNEEECIGCEKCVEACPGSMIEYNGEKLGVKLPEACPACGLCVESCPVEVISL 246
           + E+ECIGC KC++ACP   I   G+ +   L   C  C LCVE CPV+ I +
Sbjct: 109 IREDECIGCTKCIQACPVDAIIGAGKLMHTVLTADCTGCDLCVEPCPVDCIDM 161



 Score = 55.1 bits (131), Expect = 2e-12
 Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 9/67 (13%)

Query: 149 IEDIAVIDTDKCIYCTVCSQTCPWNAIFVAGKLPQKRQKTIKSFTVNEEECIGCEKCVEA 208
           ++ +A I  D+CI CT C Q CP +AI  AGKL           TV   +C GC+ CVE 
Sbjct: 103 VKKVAYIREDECIGCTKCIQACPVDAIIGAGKL---------MHTVLTADCTGCDLCVEP 153

Query: 209 CPGSMIE 215
           CP   I+
Sbjct: 154 CPVDCID 160



 Score = 44.3 bits (103), Expect = 3e-09
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 11/59 (18%)

Query: 91  CVLCEKCVEICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPECPVDAISI 149
           C+ C KC++ CP + I   GK                +T DC  C +CV  CPVD I +
Sbjct: 114 CIGCTKCIQACPVDAIIGAGKLMHT-----------VLTADCTGCDLCVEPCPVDCIDM 161



 Score = 39.3 bits (90), Expect = 9e-08
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 89  GHCVLCEKCVEICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPECPVDAI- 147
           G     EK   +   E   L  +A+   K++   +E      +C+ C  C+  CPVDAI 
Sbjct: 76  GGTATMEKLANLMGVEPEPLNAEAQSQVKKVAYIRED-----ECIGCTKCIQACPVDAII 130

Query: 148 -SIEDIAVIDTDKCIYCTVCSQTCPWNAI 175
            + + +  + T  C  C +C + CP + I
Sbjct: 131 GAGKLMHTVLTADCTGCDLCVEPCPVDCI 159



 Score = 34.7 bits (78), Expect = 2e-06
 Identities = 35/136 (25%), Positives = 50/136 (36%), Gaps = 37/136 (27%)

Query: 255 PVTDE-GLVWSEEKCAYCG-----PCAI---------KCPTGAI----KVVNPKGLELPS 295
           P+ DE   +  + +C  CG     P A          KCP G      K+ N  G+E P 
Sbjct: 35  PIVDELEAILPQTQCGQCGYPGCRPYAEAIANGDKVNKCPPGGTATMEKLANLMGVE-PE 93

Query: 296 KKKTEKANEFAM--------CIRCGACAMKCPTGAL-KMGKMVHEGKEYARVEFSPALCN 346
               E  ++           CI C  C   CP  A+   GK++H            A C 
Sbjct: 94  PLNAEAQSQVKKVAYIREDECIGCTKCIQACPVDAIIGAGKLMHT--------VLTADCT 145

Query: 347 ECGECVDVCPQKTLEL 362
            C  CV+ CP   +++
Sbjct: 146 GCDLCVEPCPVDCIDM 161



 Score = 34.7 bits (78), Expect = 2e-06
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 7/51 (13%)

Query: 6   IQEDACLVCNACAKACPTEAI-------EIAPFKTCIQCFSCATACPTGAL 49
           I+ED C+ C  C +ACP +AI              C  C  C   CP   +
Sbjct: 109 IREDECIGCTKCIQACPVDAIIGAGKLMHTVLTADCTGCDLCVEPCPVDCI 159



 Score = 32.0 bits (71), Expect = 1e-05
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 34  CIQCFSCATACPTGALVEKDGKLVFNGSKCDLDGA--CQKACPV 75
           CI C  C  ACP  A++   GKL+      D  G   C + CPV
Sbjct: 114 CIGCTKCIQACPVDAIIGA-GKLMHTVLTADCTGCDLCVEPCPV 156



 Score = 27.7 bits (60), Expect = 3e-04
 Identities = 30/127 (23%), Positives = 40/127 (31%), Gaps = 23/127 (18%)

Query: 201 GCEKCVEACPGSMIEYNGEKLGVKLPEACPACGLCVESCPVEVISLEVE--YASAKPVTD 258
           GC    EA        NG+K+       CP  G         ++ +E E   A A+    
Sbjct: 56  GCRPYAEAIA------NGDKVN-----KCPPGGTATMEKLANLMGVEPEPLNAEAQSQVK 104

Query: 259 EGLVWSEEKCAYCGPCAIKCPTGAIKVVNPKGLELPSKKKTEKANEFAMCIRCGACAMKC 318
           +     E++C  C  C   CP  AI              K       A C  C  C   C
Sbjct: 105 KVAYIREDECIGCTKCIQACPVDAI----------IGAGKLMHTVLTADCTGCDLCVEPC 154

Query: 319 PTGALKM 325
           P   + M
Sbjct: 155 PVDCIDM 161



 Score = 24.3 bits (51), Expect = 0.003
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 24/67 (35%)

Query: 340 FSPALCNECGECVDVCP-------QKTLELTGDDKMPLKGY---------------CVMC 377
           ++ A+ N  G+ V+ CP       +K   L G +  PL                  C+ C
Sbjct: 60  YAEAIAN--GDKVNKCPPGGTATMEKLANLMGVEPEPLNAEAQSQVKKVAYIREDECIGC 117

Query: 378 LKCIEAC 384
            KCI+AC
Sbjct: 118 TKCIQAC 124