Pairwise Alignments

Query, 333 a.a., RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 from Methanococcus maripaludis S2

Subject, 305 a.a., tRNA pseudouridine synthase B (EC 4.2.1.70) from Pseudomonas fluorescens FW300-N2E2

 Score =  116 bits (291), Expect = 6e-31
 Identities = 80/235 (34%), Positives = 113/235 (48%), Gaps = 38/235 (16%)

Query: 30  TGLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPVALGNTTKCVPIWHI 89
           +G++++DKP G TS+     VR +LN  KAGH G+LDP  TG LP+  G  TK       
Sbjct: 12  SGIILLDKPLGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATKFSQYLLD 71

Query: 90  PPKEYVCLMHLHD-----DAE------------LVDIENIFKEFTGRIHQRPPLKAAVKR 132
             K Y  L  L       DAE              DIE +  +F G+I Q PP+ +A+KR
Sbjct: 72  SDKGYETLAQLGKTTTTADAEGEVLLERPVTVGQADIEAVLPKFRGQISQIPPMYSALKR 131

Query: 133 S-----------------LRIRKIYEIEILEIDGRDILFRTKCQSGTYLRKLVDDMGEAL 175
                              R   I  +E+L  DG  +     C  GTY+R LV+D+GE L
Sbjct: 132 DGQPLYKLARAGEVVEREPRSVTIARLELLAFDGNTVRLAVDCSKGTYIRTLVEDIGEQL 191

Query: 176 GTSAHMQELRRTISGPFYENEAVYLQDLLDAYIFWKEDGNEEELRKIVKPLEYGL 230
           G  A++ ELRRT +GPF   + V L++L   +     +G  E + + + P + GL
Sbjct: 192 GCGAYVAELRRTQAGPFTLAQTVTLEELEAVH----AEGGNEAVDRFLMPSDSGL 242