Pairwise Alignments

Query, 333 a.a., RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 from Methanococcus maripaludis S2

Subject, 305 a.a., tRNA pseudouridine 55 synthase from Pseudomonas stutzeri RCH2

 Score =  119 bits (299), Expect = 7e-32
 Identities = 81/253 (32%), Positives = 121/253 (47%), Gaps = 38/253 (15%)

Query: 31  GLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPVALGNTTKCVPIWHIP 90
           G++++DKP G TS+     VR +LN  KAGH G+LDP  TG LP+  G  TK        
Sbjct: 13  GIILLDKPRGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATKFSQYLLDA 72

Query: 91  PKEYVCLMHLH-----DDAE------------LVDIENIFKEFTGRIHQRPPLKAAVKRS 133
            K Y  +M L       DAE            +  +E +  +F G I Q PP+ +A+KR 
Sbjct: 73  DKAYETVMQLGVTTTTADAEGEVLERKPVAVTVEQLEALLPQFRGDILQVPPMYSALKRD 132

Query: 134 -----------------LRIRKIYEIEILEIDGRDILFRTKCQSGTYLRKLVDDMGEALG 176
                             R   I  +E+L ++G        C  GTY+R LV+D+G  LG
Sbjct: 133 GQPLYKLARAGEVVEREPRSVNIARLELLSLEGDKARLAVSCSKGTYIRTLVEDLGHLLG 192

Query: 177 TSAHMQELRRTISGPFYENEAVYLQDLLDAYIFWKEDGNEEELRKIVKPLEYGLQHLKKI 236
             AH+ ELRRT +GPF  ++ V L+ L   +     +G  E L  +++P++ GL+H   +
Sbjct: 193 CGAHVAELRRTQAGPFDLSQTVTLETLEQLH----SEGGAEALDALLQPVDSGLEHWPLL 248

Query: 237 IIKDSAVDAVCHG 249
            + + +     HG
Sbjct: 249 QLSEHSAYYWLHG 261