Pairwise Alignments

Query, 333 a.a., RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 from Methanococcus maripaludis S2

Subject, 312 a.a., tRNA pseudouridine(55) synthase TruB from Vibrio cholerae E7946 ATCC 55056

 Score = 97.8 bits (242), Expect = 3e-25
 Identities = 70/266 (26%), Positives = 117/266 (43%), Gaps = 44/266 (16%)

Query: 31  GLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPVALGNTTKCVPIWHIP 90
           G++++DKP+G +S++    V+ +    KAGH G LDP  TG LP+ LG  TK        
Sbjct: 12  GVILLDKPTGISSNDALQKVKRLYGAEKAGHTGALDPLATGMLPICLGEATKFSQFLLDS 71

Query: 91  PKEYVCLMHLHDDAELVDIEN-----------------IFKEFTGRIHQRPPLKAAVK-- 131
            K Y  +  L +  +  D +                     +F G   Q P + +A+K  
Sbjct: 72  DKRYRVIAKLGERTDTSDSDGQVVQTRPVHVDYDTLLACIAKFRGETDQVPSMFSALKYQ 131

Query: 132 ---------------RSLRIRKIYEIEILEIDGRDILFRTKCQSGTYLRKLVDDMGEALG 176
                          R  R   +YEIE+   +G ++     C  GTY+R +VDD+GE LG
Sbjct: 132 GRPLYEYARQGIEVPREARKITVYEIELHRFEGDEVEMEVHCSKGTYIRTIVDDLGEMLG 191

Query: 177 TSAHMQELRRTISGPFYENEAVYLQDLLDAYIFWKEDGNEEE------LRKIVKPLEYGL 230
             AH+  LRR +    Y  E +   + L+A +   E  + +E      L  ++ P++  +
Sbjct: 192 CGAHVTMLRR-VGVANYPYERMVTLEQLNALV---EQAHRDEKAVADVLDPLLLPMDTAV 247

Query: 231 QHLKKIIIKDSAVDAVCHGATLYSSG 256
           + L ++ +    +  + HG  +  SG
Sbjct: 248 EALPEVNVIPELMTLIQHGQAVQVSG 273