Pairwise Alignments

Query, 333 a.a., RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 from Methanococcus maripaludis S2

Subject, 305 a.a., tRNA pseudouridine synthase B from Pseudomonas syringae pv. syringae B728a

 Score =  112 bits (281), Expect = 9e-30
 Identities = 78/235 (33%), Positives = 111/235 (47%), Gaps = 38/235 (16%)

Query: 30  TGLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPVALGNTTKCVPIWHI 89
           +G++++DKP G TS+     VR +LN  KAGH G+LDP  TG LP+  G  TK       
Sbjct: 12  SGIILLDKPLGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATKFSQYLLD 71

Query: 90  PPKEYVCLMHL-------HDDAELV----------DIENIFKEFTGRIHQRPPLKAAVKR 132
             K Y  L  L         + E++          DIE     F G+I Q PP+ +A+KR
Sbjct: 72  SDKSYETLAQLGKTTTTADSEGEVLLTRPVTVGRDDIEAALPHFRGQISQIPPMYSALKR 131

Query: 133 S-----------------LRIRKIYEIEILEIDGRDILFRTKCQSGTYLRKLVDDMGEAL 175
                              R   I  +E+L  +G        C  GTY+R LV+D+GE L
Sbjct: 132 DGQPLYKLARAGEVVEREPRSVTIARLELLACEGDTARLSVDCSKGTYIRTLVEDIGEKL 191

Query: 176 GTSAHMQELRRTISGPFYENEAVYLQDLLDAYIFWKEDGNEEELRKIVKPLEYGL 230
           G  A++ ELRRT +GPF   + V L++L   +     DG  E + + + P + GL
Sbjct: 192 GCGAYVAELRRTQAGPFTLAQTVTLEELEQVH----ADGGNEAVDRFLMPSDSGL 242