Pairwise Alignments

Query, 333 a.a., RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 from Methanococcus maripaludis S2

Subject, 296 a.a., tRNA pseudouridine(55) synthase TruB from Synechocystis sp000284455 PCC 6803

 Score = 84.7 bits (208), Expect = 3e-21
 Identities = 85/302 (28%), Positives = 130/302 (43%), Gaps = 61/302 (20%)

Query: 31  GLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPVALGNTTKCVPIWHIP 90
           G + + KP   TSH+  A VR +L   + GHGGTLDP   G LP+A+G+ T+ +P  ++P
Sbjct: 3   GFLNLHKPLHLTSHDCVAKVRRLLRQKRVGHGGTLDPLAEGVLPLAVGSATRLLP--YLP 60

Query: 91  -PKEYVCLMHL-----HDD-------------AELVDIENIFKEFTGRIHQRPPLKAAVK 131
             K+Y  L+        DD               L  +E I   F G I Q PP  +A++
Sbjct: 61  GAKQYQALIRFGVRTDSDDLAGEVLESKNVSYLTLAAVEQILPTFLGEIEQIPPQYSAIQ 120

Query: 132 RSLRIRKIYEI-----------EILEIDGRDIL-----------FRTKCQSGTYLRKLVD 169
             +  +++YE+            ++ I+   IL            +  C  GTY+R L  
Sbjct: 121 --VNGKRLYELARAGIPQAVPSRMVTINDLKILGWRSGNQPELDLQVTCGEGTYIRALAR 178

Query: 170 DMGEALGTSAHMQELRRTISGPFYENEAVYLQDLLDAYIFWKEDGNEEELRKIVKPLEYG 229
           D+G+ LGT A +  L R  SG    + +V L  L       ++   EEE   ++ P E  
Sbjct: 179 DLGDRLGTGATLAGLVRQQSGGMALDNSVGLTAL-------EKIVAEEEHIPLIPPQE-A 230

Query: 230 LQHLKKIIIKDSAVDAVCHGATLYSSGISKIEKGLGTDEVVLIETLKGEAVAVGKPLMNT 289
           L HL  + +         HG  L    +  +  G     VVLI +  G    +G  L+  
Sbjct: 231 LSHLPTVQLNSELEKRWFHGQRLL---LPDLPVG-----VVLITSELGPVKCLGVALVTP 282

Query: 290 KD 291
           +D
Sbjct: 283 ED 284