Pairwise Alignments

Query, 333 a.a., RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 from Methanococcus maripaludis S2

Subject, 294 a.a., tRNA pseudouridine synthase B from Synechococcus elongatus PCC 7942

 Score = 99.4 bits (246), Expect = 1e-25
 Identities = 71/219 (32%), Positives = 103/219 (47%), Gaps = 50/219 (22%)

Query: 31  GLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPVALGNTTKCVPIWHIP 90
           G V +DKP+G TSH+  A +R +L   + GHGGTLDP VTG LP+A+G  T+ +P  ++P
Sbjct: 5   GFVNLDKPAGWTSHDCVAKLRRLLRERRIGHGGTLDPAVTGVLPIAVGRATRLLP--YLP 62

Query: 91  P-KEYVCLM----------------------HLHDDAELVDIENIFKEFTGRIHQRPPLK 127
             K YV  +                      HL  +A    IE    +F G I Q+PP  
Sbjct: 63  SGKTYVGTIRFGLQTSTDDLTGDRLAEADTSHLSREA----IEAALPQFLGHIQQQPPQV 118

Query: 128 AAVK---------------------RSLRIRKIYEIEILEIDGRDILFRTKCQSGTYLRK 166
           +AV+                     R++ I+ I  ++       ++     C +GTY+R 
Sbjct: 119 SAVQVQGQRLYQLARRGEAPTELPWRTVEIQSIRILQWRSGSQAELSVEIHCGAGTYIRS 178

Query: 167 LVDDMGEALGTSAHMQELRRTISGPFYENEAVYLQDLLD 205
           L  D+G  LG    + ELRRT S  F  N++  L +LLD
Sbjct: 179 LARDLGAVLGVGGTLAELRRTASSGFDLNQSTPLTELLD 217