Pairwise Alignments

Query, 333 a.a., RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 from Methanococcus maripaludis S2

Subject, 315 a.a., pseudouridylate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score = 98.2 bits (243), Expect = 2e-25
 Identities = 73/266 (27%), Positives = 122/266 (45%), Gaps = 40/266 (15%)

Query: 31  GLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPVALGNTTKCVPIWHIP 90
           G+V++DKP+G +S+     V+ + N  KAGH G LDP  TG LPV LG  TK        
Sbjct: 12  GIVLLDKPTGMSSNHALQRVKRIYNASKAGHTGALDPLATGMLPVCLGEATKFSQHLLDA 71

Query: 91  PKEYVCLMHL-------HDDAELVD----------IENIFKEFTGRIHQRPPLKAAVK-- 131
            K Y+    L         D E+V           ++     F G   Q P + +A+K  
Sbjct: 72  DKRYLVTAKLGQRTDTSDSDGEVVSERPLNFTQEALDAALDSFRGDTLQVPSMFSALKYQ 131

Query: 132 ---------------RSLRIRKIYEIEILEIDGRDILFRTKCQSGTYLRKLVDDMGEALG 176
                          R  R   ++E+  ++++G ++     C  GTY+R ++DD+GE LG
Sbjct: 132 GQPLYKYAREGKEVPREARPITVFELNFIKLEGDELTLDIHCSKGTYIRTIIDDLGEKLG 191

Query: 177 TSAHMQELRRT-ISGPFYENEAVYLQDLLDAYIFWKEDGNEEE---LRKIVKPLEYGLQH 232
             AH+  LRRT ++G  Y  E +   + L+A +   E    E    L  ++ P++  + +
Sbjct: 192 CGAHVIMLRRTAVAG--YPYERMVTIEALEALLEQAEKEGVEPKTLLDPLLLPMDTAVAN 249

Query: 233 LKKIIIKDSAVDAVCHGATLYSSGIS 258
             ++ I D+    + +G  +  +G+S
Sbjct: 250 FPEVNIPDAVAPYLMNGNPVRVAGVS 275