Pairwise Alignments

Query, 333 a.a., RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 from Methanococcus maripaludis S2

Subject, 308 a.a., tRNA pseudouridine synthase B (NCBI) from Rhodospirillum rubrum S1H

 Score = 95.9 bits (237), Expect = 1e-24
 Identities = 84/293 (28%), Positives = 129/293 (44%), Gaps = 49/293 (16%)

Query: 31  GLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPVALGNTTKCVPIWHIP 90
           G + IDKP G TS +V   +R  ++  K GHGGTLDP  +G LP+A G  TK V      
Sbjct: 12  GWLAIDKPVGITSTDVVNRLRRTMDAAKVGHGGTLDPLASGVLPIAFGEATKTVSYVMDG 71

Query: 91  PKEYVCLMHLHD-------DAELVDIENI----------FKEFTGRIHQRPPLKAAVKRS 133
            K Y  ++   +       + +++D  ++             FTG I Q PP+ +AVK  
Sbjct: 72  TKVYHMVVGWGEARDTDDREGKVIDTSDVRPDAQAITAMLARFTGEIEQVPPIYSAVK-- 129

Query: 134 LRIRKIYEI----EILEIDGRDIL----------------FRTKCQSGTYLRKLVDDMGE 173
           +  R+ Y++    + +E+  R IL                FR     G Y+R L  D+  
Sbjct: 130 VEGRRSYDLARADQAVELKSRKILIKDLTLLETSTPDFGHFRIVSGKGAYMRSLARDLAL 189

Query: 174 ALGTSAHMQELRRTISGPFYENEAVYLQDLLDAYIFWKEDGNEEELRKIVKPLEYGLQHL 233
           ALGT  H+  LRR   GPF    A+ L D++DA       G++    + + P+E  L  +
Sbjct: 190 ALGTVGHVVALRRLACGPFTAETAISL-DMVDAL------GHDAPHSESLLPIEAALADI 242

Query: 234 KKIIIKDSAVDAVCHG--ATLYSSGISKIEKGLGTDEVVLIETLKGEAVAVGK 284
             + + ++    +  G   +L          GL   E V    L G+ VA+ K
Sbjct: 243 PAVPLTEAEARRLSQGQPVSLLHLASRTPLNGLAQGETVQ-ALLNGKLVALAK 294