Pairwise Alignments

Query, 333 a.a., RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 from Methanococcus maripaludis S2

Subject, 301 a.a., tRNA pseudouridine synthase B from Phaeobacter inhibens DSM 17395

 Score =  102 bits (255), Expect = 9e-27
 Identities = 81/242 (33%), Positives = 111/242 (45%), Gaps = 42/242 (17%)

Query: 30  TGLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPVALGNTTKCVPIWHI 89
           +G +V+DKP+G TS  V   VR   +  KAGH GTLDP+ TG L VALG  TK VP    
Sbjct: 11  SGWLVVDKPAGLTSTAVVNKVRWAFDAKKAGHAGTLDPEATGVLAVALGEATKTVPYITD 70

Query: 90  PPKEYVCLMHL-----HDDAELV------------DIENIFKEFTGRIHQRPPLKAAVK- 131
             K Y   + L      DDAE              +I     +F G I Q PP  +AVK 
Sbjct: 71  ALKAYTFTVRLGQATNTDDAEGEVIARSETRPSDDEIVAALPQFLGDIMQVPPKFSAVKI 130

Query: 132 --------------RSLRIRKIYEIEILEIDGRD---ILFRTKCQSGTYLRKLVDDMGEA 174
                           L  R ++  E++ +D  D   ++    C  G Y+R +  D+G A
Sbjct: 131 DGQRAYKLARDGEEIELAARPLWVEELILVDRPDDDHVVLEMTCGKGGYVRSIARDLGAA 190

Query: 175 LGTSAHMQELRRTISGPFYENEAVYLQDLLDAYIFWKEDGNEEELRKIVKPLEYGLQHLK 234
           LG   H++ LRRT SGPF   + + L+ L        E     +L   ++PLE GL  L 
Sbjct: 191 LGCHGHVKCLRRTWSGPFDAEDGISLETL-------DEMAKSPDLDGYLRPLEEGLADLP 243

Query: 235 KI 236
           ++
Sbjct: 244 QL 245