Pairwise Alignments

Query, 333 a.a., RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 from Methanococcus maripaludis S2

Subject, 315 a.a., tRNA pseudouridine synthase B (RefSeq) from Shewanella loihica PV-4

 Score =  100 bits (250), Expect = 4e-26
 Identities = 85/299 (28%), Positives = 133/299 (44%), Gaps = 44/299 (14%)

Query: 31  GLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPVALGNTTKCVPIWHIP 90
           G+V++DK +G +S+     V+ + N  KAGH G LDP  TG LP+ LG  TK        
Sbjct: 12  GIVLLDKDTGMSSNFALQRVKRIYNAAKAGHTGALDPLATGMLPICLGEATKFSQHLLDA 71

Query: 91  PKEYVCLMHL-------HDDAELVD----------IENIFKEFTGRIHQRPPLKAAVK-- 131
            K Y+    L         D E+V           +E   + F G   Q P + +A+K  
Sbjct: 72  DKRYLVTAKLGVRTDTSDSDGEVVQTRPINFTEQQLEEALEHFRGETMQVPSMYSALKYQ 131

Query: 132 ---------------RSLRIRKIYEIEILEIDGRDILFRTKCQSGTYLRKLVDDMGEALG 176
                          R  R  K++E+  ++++G ++     C  GTY+R + DD+GE LG
Sbjct: 132 GQPLYKYAREGKEVPREARPIKVFELNFIKLEGDELTLDIHCSKGTYIRTITDDLGEMLG 191

Query: 177 TSAHMQELRRTISGPFYENEAVYLQDL--LDAYIFWKEDGNEEELRKIVKPLEYGLQHLK 234
             AH+  LRRT    +  ++ V L+ L  L A    +E   +E L  ++ P++  +  LK
Sbjct: 192 CGAHVIMLRRTGVAGYPYDKMVTLEQLEALLAKAQEEERPPKELLDPLLLPMDTAVSGLK 251

Query: 235 KIIIKDSAVDAVCHGATLYSSGISKIEKGLGTDEVVLIETLKGEAVAVGKPLMNTKDML 293
           +I + D     + +G  +  +        L  DE+V I TL      VG   MN   +L
Sbjct: 252 EINVSDELAHYLMNGNPVQVA-------NLPIDELVRI-TLGEAKQFVGIGQMNDDGLL 302