Pairwise Alignments

Query, 333 a.a., RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 from Methanococcus maripaludis S2

Subject, 300 a.a., tRNA pseudouridine 55 synthase from Dechlorosoma suillum PS

 Score =  106 bits (265), Expect = 6e-28
 Identities = 80/267 (29%), Positives = 122/267 (45%), Gaps = 45/267 (16%)

Query: 31  GLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPVALGNTTKCVPIWHIP 90
           G++++DKP   +S++     R   +  KAGH GTLDP  TG LP+  G  TK        
Sbjct: 13  GVLLLDKPLHLSSNDALQKARRFFSAAKAGHTGTLDPLATGLLPICFGEATKFSADLLDA 72

Query: 91  PKEYVCLMHLHDDAELVDIEN-----------------IFKEFTGRIHQRPPLKAAVKRS 133
            K YV  + L       D E                  +   FTG I Q PP+ +A+KR 
Sbjct: 73  DKAYVADVRLGQTTATGDAEGEILQTRPVQVSAEQLAAVLPRFTGVIAQVPPMYSALKRD 132

Query: 134 -----------LRI-RKIYEIEILEI-----DGRDILFRTKCQSGTYLRKLVDDMGEALG 176
                      L + R+  E+ IL +     DG +      C  GTY+R L +D+GEALG
Sbjct: 133 GKPLYELARQGLEVEREAREVTILSLAASDFDGVNFRLHVDCSKGTYIRTLAEDIGEALG 192

Query: 177 TSAHMQELRRTISGPFYENEAVYLQDLLDAYIFWKEDGNEEELRKIVKPLEYGLQHLKKI 236
             AH+  LRRT  GP   + AV L +L        E+  E +  + + P++  L+ L ++
Sbjct: 193 CGAHLTGLRRTRVGPLELDRAVSLAEL--------ENTEEADRGRYLLPVDALLRSLPEV 244

Query: 237 IIKDSAVDAVCHG---ATLYSSGISKI 260
           +++  ++    HG   AT   SG +++
Sbjct: 245 LLEAESLQRFAHGNPVATELQSGKARV 271