Pairwise Alignments

Query, 333 a.a., RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 from Methanococcus maripaludis S2

Subject, 308 a.a., tRNA pseudouridine synthase B (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 77.4 bits (189), Expect = 4e-19
 Identities = 75/255 (29%), Positives = 102/255 (40%), Gaps = 46/255 (18%)

Query: 31  GLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPVALGNTTKCVP-IWHI 89
           GL+V++KP GPTS +  A V+  L   K GH GTLDP   G L V LG+ TK    +   
Sbjct: 10  GLLVLNKPQGPTSAQCIARVKR-LGQKKIGHAGTLDPMARGVLLVLLGHATKISGHLMAD 68

Query: 90  PPKEYVCLMHL------------------HDDAELVDIENIFKEFTGRIHQR-PPLKAAV 130
             K Y+  + L                  +D     DI    + + G   Q  PP  AA 
Sbjct: 69  GEKVYLGTLRLGTTTDTWDAEGSVTATAPYDHVTPDDIRREVENWLGSTEQEVPPYSAAK 128

Query: 131 KRSLRIRK----------------IYEIEILEIDGRDILFRTKCQSGTYLRKLVDDMGEA 174
            +   + K                I   +++  D     FR  C SGTY+R L   +G  
Sbjct: 129 HQGQPLYKLSRAGRETPVKTKTVEISRAQVVSCDLPSATFRVTCSSGTYIRSLAHSLGMR 188

Query: 175 LGTSAHMQELRRTISGPFYENEAVYLQDLLDAYIFWKEDGNEEELRKIVKPLEYGLQHLK 234
           LG  A + EL R  S PF  +EA  L  +L            E L + V P+   L H  
Sbjct: 189 LGCGAMLTELTREYSHPFGIDEAHELDAVL---------AEPERLPERVIPVTRALPHWP 239

Query: 235 KIIIKDSAVDAVCHG 249
           K+ I  +    V +G
Sbjct: 240 KLRISAAQEAGVRNG 254