Pairwise Alignments

Query, 333 a.a., RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 from Methanococcus maripaludis S2

Subject, 314 a.a., tRNA pseudouridine(55) synthase TruB from Pantoea sp. MT58

 Score = 90.5 bits (223), Expect = 5e-23
 Identities = 68/275 (24%), Positives = 120/275 (43%), Gaps = 43/275 (15%)

Query: 31  GLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPVALGNTTKCVPIWHIP 90
           G++++DKP G +S++V   V+ + N  +AGH G LDP  TG LP+ LG  TK        
Sbjct: 13  GVLLLDKPQGVSSNDVLQKVKRIFNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72

Query: 91  PKEYVCLMHLHD-------DAELV----------DIENIFKEFTGRIHQRPPLKAAVK-- 131
            K Y  +  L +       D  +V          ++++  + F G   Q P + +A+K  
Sbjct: 73  DKRYRVIARLGERTDTSDADGNIVQTRPVSFSQAELDSALESFRGETLQVPSMFSALKHQ 132

Query: 132 ---------------RSLRIRKIYEIEILEIDGRDILFRTKCQSGTYLRKLVDDMGEALG 176
                          R  R   +YE++ +     ++     C  GTY+R ++DD+GE LG
Sbjct: 133 GRPLYEYARQGIVIEREPRPITVYELQFIRWQDNELELEIHCSKGTYIRTIIDDLGEKLG 192

Query: 177 TSAHMQELRRTISGPFYENEAVYLQDLLDAYIFWKEDGN---EEELRKIVKPLEYGLQHL 233
             AH+  LRR +    Y  E +   + L+  +    D     E +L  ++ P++      
Sbjct: 193 CGAHVTMLRR-VQVARYPYERMVTLEQLNTLLAEATDAGISLESQLDPLLLPMDSPASDF 251

Query: 234 KKIIIKDSAVDAVCHGATLYSS-----GISKIEKG 263
            ++ I  +  D    G  + +S     G+ ++ +G
Sbjct: 252 PEVNIPTAVADLFRLGQPVQASNAPAQGLVRVSEG 286