Pairwise Alignments

Query, 333 a.a., RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 from Methanococcus maripaludis S2

Subject, 304 a.a., tRNA pseudouridine synthase B (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 78.2 bits (191), Expect = 2e-19
 Identities = 80/258 (31%), Positives = 111/258 (43%), Gaps = 46/258 (17%)

Query: 31  GLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPVALGNTTKCV-PIWHI 89
           GL+V+DKPSGP+S +  + V+  L   K GH GTLDP   G L V LG+ TK    +   
Sbjct: 7   GLLVLDKPSGPSSAQCISKVKR-LGQKKIGHAGTLDPMAGGVLLVLLGHATKISGHLMAD 65

Query: 90  PPKEYVCLMHLHD-----DAE-------------LVDIENIFKEFTGRIHQR-PPLKAAV 130
             K Y   + L +     DAE               D+  I   + G   Q  PP  AA 
Sbjct: 66  GEKVYAGTLRLGETTDTWDAEGTVTATAPWHHVTEADVRAIVDSWLGSSEQEVPPYSAAK 125

Query: 131 KRSLRIRKI-------------YEIEILEI---DGRDILFRTKCQSGTYLRKLVDDMGEA 174
            +   + K+              EI + E+   D   + FR +C SGTY+R L   +G  
Sbjct: 126 HQGQPLYKLSRAGRETPVKTKTVEISLAEVVWCDLPHVRFRVRCSSGTYIRSLAHSLGIR 185

Query: 175 LGTSAHMQELRRTISGPFYENEAVYLQDLLDAYIFWKEDGNEEELRKIVKPLEYGLQHLK 234
           LG  A + EL R  S PF     + +   LDA +   E G    L + V P+ + L H  
Sbjct: 186 LGCGAVLTELTREYSHPF----GLDMAHTLDAVL--AEPG---RLAERVIPITHALPHWP 236

Query: 235 KIIIKDSAVDAVCHGATL 252
           K+ I      +V +G  L
Sbjct: 237 KVGISLQQEASVRNGIPL 254