Pairwise Alignments

Query, 333 a.a., RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 from Methanococcus maripaludis S2

Subject, 310 a.a., tRNA pseudouridine synthase B from Caulobacter crescentus NA1000

 Score = 98.2 bits (243), Expect = 2e-25
 Identities = 74/258 (28%), Positives = 108/258 (41%), Gaps = 42/258 (16%)

Query: 30  TGLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPVALGNTTKCVPIWHI 89
           +G + +DKP   TS    + VR   N  K GH GTLDP  TG LP+ALG  TK VP    
Sbjct: 11  SGWLCLDKPYDLTSTTAVSRVRRAFNAQKGGHAGTLDPLATGILPIALGEATKTVPFLMD 70

Query: 90  PPKEYVCLMHLHDDAELVD-----------------IENIFKEFTGRIHQRPPLKAAVK- 131
             K Y   +    D   +D                 +E     F G + Q PP  +A+K 
Sbjct: 71  ADKAYRFTIAWGRDTTTLDREGETTGTSDVRPTREQVEAALPAFIGEVDQIPPNFSAIKV 130

Query: 132 --------------RSLRIRKIYEIEILEIDGRD---ILFRTKCQSGTYLRKLVDDMGEA 174
                           L  RK+   ++  +D  D   +    +C  GTY+R +V D+ +A
Sbjct: 131 DGERAYDLARDGVEFELPTRKVSIFDLKVVDQPDADHVTLTMECGKGTYVRAVVRDLAKA 190

Query: 175 LGTSAHMQELRRTISGPFYENEAVYLQDLLDAYIFWKEDGNEEELRKIVKPLEYGLQHLK 234
           LGT  H+ +LRRT  G F E  A+ L+ L       +    E  L + + P+E  L  + 
Sbjct: 191 LGTCGHVADLRRTRVGGFSEASAIALETL-------ENLSYEARLSEALLPVETALDDIP 243

Query: 235 KIIIKDSAVDAVCHGATL 252
            + + D     +  G  +
Sbjct: 244 ALAVTDEDAFRLAQGRAI 261