Pairwise Alignments

Query, 333 a.a., RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 from Methanococcus maripaludis S2

Subject, 240 a.a., tRNA pseudouridine synthase B (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 78.2 bits (191), Expect = 2e-19
 Identities = 70/219 (31%), Positives = 94/219 (42%), Gaps = 51/219 (23%)

Query: 32  LVVIDKPSGPTSHEVAAWVRNML------NLVKAGHGGTLDPKVTGALPVALGNTTKCVP 85
           ++  +KP G TS +V   VR  +        +K GH GTLDP  TG + +  G  TK + 
Sbjct: 8   VLFFNKPLGWTSFKVVGHVRYHICRRIGVKKLKVGHAGTLDPLATGVMILCTGKATKRIE 67

Query: 86  IWHIPPKEYVCLMHL------HDDAELVD------------IENIFKEFTGRIHQRPPLK 127
            +    KEYV  + L      +D    +D            +E     F G I Q PP  
Sbjct: 68  EFQYHTKEYVATLRLGATTPSYDLEHEIDATYPTGHITRELVEETLTHFLGAIEQVPPAF 127

Query: 128 AAV----KRSLRIRK-------------IYEIEILEIDGRD----ILFRTKCQSGTYLRK 166
           +A     KR+  + +             I EIE+LE    D    I  R  C  GTY+R 
Sbjct: 128 SACMVDGKRAYELARKGEEVELKAKQLVIDEIELLECRLDDPEPTIRIRVVCSKGTYIRA 187

Query: 167 LVDDMGEALGTSAHMQELRRTISGPFYENEAVYLQDLLD 205
           L  D+GEAL + AH+ EL RT  G       V L+D LD
Sbjct: 188 LARDIGEALQSGAHLTELIRTRVGD------VRLEDCLD 220