Pairwise Alignments

Query, 333 a.a., RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 from Methanococcus maripaludis S2

Subject, 317 a.a., tRNA pseudouridine synthase B (RefSeq) from Shewanella sp. ANA-3

 Score = 92.0 bits (227), Expect = 2e-23
 Identities = 80/299 (26%), Positives = 129/299 (43%), Gaps = 44/299 (14%)

Query: 31  GLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPVALGNTTKCVPIWHIP 90
           G+V++DK +G +S+     V+   N  KAGH G LDP  TG LPV LG  TK        
Sbjct: 12  GIVLLDKATGMSSNFALQRVKRFFNANKAGHTGALDPLATGMLPVCLGEATKFSQHLLDS 71

Query: 91  PKEYVCLMHL-------HDDAELVD----------IENIFKEFTGRIHQRPPLKAAVK-- 131
            K Y+    L         D E+V           + +  + F G   Q P + +A+K  
Sbjct: 72  DKRYLVTAKLGQRTDTSDSDGEVVQTRPLEFTEAQLMSALEHFRGDTQQVPSMYSALKYQ 131

Query: 132 ---------------RSLRIRKIYEIEILEIDGRDILFRTKCQSGTYLRKLVDDMGEALG 176
                          R  R   ++E+  + ++G ++     C  GTY+R ++DD+GE LG
Sbjct: 132 GQPLYKYAREGIEVPREARPITVFELNFIGLEGDELTLDIHCSKGTYIRTIIDDLGEMLG 191

Query: 177 TSAHMQELRRTISGPFYENEAVYLQDLLDAYIFWKEDGNEEE--LRKIVKPLEYGLQHLK 234
             AH+  LRRT    +  ++ V L+ L       +E+  +    L  ++ P++  +    
Sbjct: 192 CGAHVIMLRRTQVAHYPYDKMVTLEQLEALVAKAQEEQLDPSSLLDSLLLPMDTAVADFP 251

Query: 235 KIIIKDSAVDAVCHGATLYSSGISKIEKGLGTDEVVLIETLKGEAVAVGKPLMNTKDML 293
           ++ + D++   +  G  +  S       GL  D +V I TL  E   VG   MN   +L
Sbjct: 252 EVNVPDASAAYLMQGQAVRVS-------GLVADTLVRI-TLGTERRFVGIGEMNQDGLL 302