Pairwise Alignments

Query, 273 a.a., TIM barrel protein from Methanococcus maripaludis S2

Subject, 277 a.a., endonuclease IV (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 43.1 bits (100), Expect = 7e-09
 Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 19/168 (11%)

Query: 60  HAPYYINLNAKEPEKIESSIKRIVDSAKIISIFNKKNSENKNVVFHSGFYLKQDKDLVYE 119
           H  Y INL   E E +E S    +D  +       K        FH G +L  +K  + +
Sbjct: 69  HDSYLINLGHPEEEGLEKSRAAFLDEMQRCEQLGLKLLN-----FHPGSHL--NKISIED 121

Query: 120 KIKVNIQKILKIMDENKINAILRPETTGKISQFGSIDELIQLSTEID-------IMPCID 172
            + +  + I   +++ K    +   T G+ S  GS  E  QL   ID       +  C+D
Sbjct: 122 CLALIAESINLTLEKTKGVTAVIENTAGQGSNLGS--EFWQLRYIIDRVNDKSRVGICLD 179

Query: 173 FSHVYARSLGKINDYDSFSNILSKLENNLGKKGIKDMHIHISGIDFGN 220
             H Y      +NDYD    +  + E  +G + ++ MH++ S  + G+
Sbjct: 180 TCHTYTAGYDIVNDYD---KVFDEFEKEVGFEYLRGMHLNDSKKELGS 224