Pairwise Alignments

Query, 546 a.a., type II/IV secretion system ATPase subunit from Methanococcus maripaludis S2

Subject, 474 a.a., Flp pilus assembly protein, ATPase CpaF from Pseudomonas stutzeri RCH2

 Score =  141 bits (355), Expect = 6e-38
 Identities = 98/340 (28%), Positives = 175/340 (51%), Gaps = 16/340 (4%)

Query: 124 SSQKNEKKKGILSKITDSGKININKSERDKFLYLLKRDLIGLGTLEPIKRDPYIEDIHVI 183
           +++   + + I  ++ D     ++ S R   +  +  +++GLG LEP+  D  + DI V 
Sbjct: 76  NAEATRQIRDICQRLLDDHAAPVSSSSRQLIIKQISDEVLGLGPLEPLLADGTVSDILVN 135

Query: 184 GAKNCQLVHKIYDMLPSNIEWEDEGDISNYLKNMCERIGRPVSDATPIVDGSLPDGSRIN 243
           G  +   V +   +  +++ + D+  + N +  +   +GR + +++P+VD  L DGSR+N
Sbjct: 136 GHASVY-VERHGKLQRTDVRFRDDQHLLNIIDRIVSSLGRRIDESSPLVDARLKDGSRVN 194

Query: 244 ILYSGDVSLKGPSFTIRKFTDVPISITQIISWGTMSAQTAAYLWLCLEYGMSIFICGETA 303
            +    +++ GPS +IR+F    +S   ++  GT++   A  L   +   +++ + G T 
Sbjct: 195 AIIP-PLAIDGPSLSIRRFAVDLLSAESLVEMGTLTPAIALVLKAIVRGRLNVLVSGGTG 253

Query: 304 SGKTTSLNAILPFIKPKSKIFSCEDTSEVKPPNPVWQQLLTRERGPE-ESRVTLFDLLRA 362
           +GKTT LN +  FI    +I + ED++E++   P   +L TR    E    +   +L+R 
Sbjct: 254 TGKTTMLNVLSSFIPHNERIVTIEDSAELQLQQPHVVRLETRPANIEGRGEINQRELVRN 313

Query: 363 ALRSRPNYIIVGEIRSVEGAVAFQAMQTGHP-VISTFHAANVRKMIQRLTG--------D 413
           +LR RP+ I++GE+R  E      AM TGH   I+T HA + R  + R+           
Sbjct: 314 SLRMRPDRIVIGEVRGPEALDMLAAMNTGHDGSITTIHANSPRDALGRIENMVSMSGATF 373

Query: 414 PI-CIPQTFMDNLNVCLFQLAVYARGKFLRRVVSVEEIEG 452
           PI  + Q     ++V L QL  +  GK  RR+VSV+EI G
Sbjct: 374 PIKALRQQIASAIDVVL-QLERHEDGK--RRLVSVQEING 410