Pairwise Alignments

Query, 546 a.a., type II/IV secretion system ATPase subunit from Methanococcus maripaludis S2

Subject, 481 a.a., Flp pilus assembly protein, ATPase CpaF from Phaeobacter inhibens DSM 17395

 Score =  139 bits (351), Expect = 2e-37
 Identities = 116/396 (29%), Positives = 192/396 (48%), Gaps = 27/396 (6%)

Query: 134 ILSKITDSGKININKSERDKFLYLLKRDLIGLGTLEPIKRDPYIEDIHVIGAKNCQLVHK 193
           I ++I +   I +N+ +R      L  ++ GLG LE + +D  + DI V G +    V +
Sbjct: 95  IATEILEEKGIVLNREDRQTLTKELYDEVTGLGPLETLLQDDTVNDILVNGPQQV-FVER 153

Query: 194 IYDMLPSNIEWEDEGDISNYLKNMCERIGRPVSDATPIVDGSLPDGSRINILYSGDVSLK 253
              +  S++ ++DE  +   +  +   +GR V ++ P VD  L DGSR N +    V++ 
Sbjct: 154 DGKLQLSDVTFKDEKHLMRIIDKIVSAVGRRVDESNPYVDARLADGSRFNAMVP-PVAVD 212

Query: 254 GPSFTIRKFTDVPISITQIISWGTMSAQTAAYLWLCLEYGMSIFICGETASGKTTSLNAI 313
           G   +IRKF    + I  ++S+G  + + AAYL   +   +++ + G T SGKTT+LNA+
Sbjct: 213 GSLVSIRKFKKDKLGIDDLVSFGAFTEEMAAYLQAAVSTRLNVIVSGGTGSGKTTTLNAL 272

Query: 314 LPFIKPKSKIFSCEDTSEVKPPNPVWQQLLTRERGPE-ESRVTLFDLLRAALRSRPNYII 372
             FI    +I + EDT+E++       ++ +R    E    V+  D L+ ALR RP+ II
Sbjct: 273 SSFIDNAERILTIEDTAELQLQQTHVGRMESRPPNVEGRGEVSPRDCLKNALRMRPDRII 332

Query: 373 VGEIRSVEGAVAFQAMQTGHP-VISTFHAANVRKMIQRLTG--------DPICIPQTFMD 423
           VGE R  E     QAM TGH   ++T HA + R  I RL           PI   ++ + 
Sbjct: 333 VGETRGEEVIDMLQAMNTGHDGSMTTIHANSARDGISRLENMIAMAGIEMPIKAVRSQIA 392

Query: 424 NLNVCLFQLAVYARGKFLRRVVSVEEIEGYYKEVDGVITRGVFEWD------PQKDVHNF 477
           +    + Q +    G   RR+ S+ EI G   E D +  + +F +         K + +F
Sbjct: 393 SAVNIIVQASRLQDGS--RRMTSITEITG--MEGDVISMQEIFRFQRVGLTPENKIIGHF 448

Query: 478 --TGLNNSYILEDKIATVAGYEDPREIYDELDLRVR 511
             TG+ + Y    +   + GY+ P  IY+   +  R
Sbjct: 449 TATGVRSHY---SERFRLWGYDLPSSIYEPTVMEAR 481