Pairwise Alignments

Query, 230 a.a., flagellar accessory protein FlaH from Methanococcus maripaludis S2

Subject, 519 a.a., circadian clock protein KaiC from Synechococcus elongatus PCC 7942

 Score = 42.0 bits (97), Expect = 2e-08
 Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 10/163 (6%)

Query: 19  GGIPFGSVILIEGEESSGKSIFCQRLAY-GFLQNSYSLSYVSTQLTTTEFVKQMMSLKYT 77
           GG+P G   L+ G   +GK++F  +  Y G ++      +V+ + T  + +K   S  + 
Sbjct: 34  GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWD 93

Query: 78  INKKLLDGNLLYIPVYPLISENAIKDDF-----IKKVMHTRAFYEKDIVLFDSISTLVSN 132
           + K + +G L  +   P      +   F     I+++ +    Y    V  DS++++   
Sbjct: 94  LAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ 153

Query: 133 -DASEVQITDLMAFFKRIASMNKIIIYTVNPKELPESILTILR 174
            DAS V   +L   F+ +A + +I   TV   E  E    I R
Sbjct: 154 YDASSVVRREL---FRLVARLKQIGATTVMTTERIEEYGPIAR 193



 Score = 27.3 bits (59), Expect = 6e-04
 Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 6/134 (4%)

Query: 18  GGGIPFGSVILIEGEESSGKSIFCQRLAYGFLQNSYSLSYVSTQLTTTEFVKQMMSLKYT 77
           GGG    S+IL  G   +GK++   R       N       + + +  + ++   S    
Sbjct: 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMD 334

Query: 78  INKKLLDGNLLYIPVYPLISENAIKDDFIKKVMHTRAFYEKDIVLFDSISTL---VSNDA 134
             +      L  +  YP   E+A  +D ++ +      ++   +  DS+S L   VSN+A
Sbjct: 335 FEEMERQNLLKIVCAYP---ESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNA 391

Query: 135 SEVQITDLMAFFKR 148
               +  +  + K+
Sbjct: 392 FRQFVIGVTGYAKQ 405