Pairwise Alignments

Query, 260 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 245 a.a., molybdenum ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  105 bits (262), Expect = 9e-28
 Identities = 70/205 (34%), Positives = 107/205 (52%), Gaps = 11/205 (5%)

Query: 21  LFLSISSLILVPKFDDVLSSIFNPEMIYSLKVSLYSSLISTGIVLGFSIPTGYAISRYSF 80
           LFLS  SL   P    +LS      ++ SLKVS  + + S    L   I   + ++R  F
Sbjct: 5   LFLS-GSLFSEP----LLSEYEAAALLLSLKVSTLAVIAS----LPLGILCAWLLARVEF 55

Query: 81  PGKSIVKAILDLPIAFPELVLGLALLLLFG-QTFIGDIL-EFFGIKVVFTKLGIVVAQIF 138
           PGK+I  +IL LP+  P +V+G  LL+  G Q  IG  L  +FG+   F+  G  +A   
Sbjct: 56  PGKAIFDSILHLPLVLPPVVVGYLLLISMGRQGIIGQWLYNWFGLSFSFSWRGAALAAAV 115

Query: 139 TALPYAIRIVCSTFQDINPRYELVSRSLGYSEFETFKNVTLPMARSGIFASSIIAFARCM 198
            + P  +R +  +F+ ++ R E  +R+LG S +  F  +TLP+   GI +  IIAFAR +
Sbjct: 116 VSFPLMVRAIRQSFETVDIRLEQAARTLGSSRWRVFLTITLPLTSPGIVSGMIIAFARSL 175

Query: 199 GTFGTVLMLAGGTYMYTETLPITLY 223
           G FG+ +         T T+P+ +Y
Sbjct: 176 GEFGSTITFVSNIPGETRTIPLAMY 200