Pairwise Alignments

Query, 407 a.a., proteasome-activating nucleotidase from Methanococcus maripaludis S2

Subject, 630 a.a., FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41 from Synechococcus elongatus PCC 7942

 Score =  229 bits (583), Expect = 2e-64
 Identities = 121/257 (47%), Positives = 162/257 (63%), Gaps = 2/257 (0%)

Query: 138 EIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTL 197
           +++ K  + F+D+ G+     +++EVV   LKN E F  VG   PKGVLL GPPGTGKTL
Sbjct: 164 QMDAKTGVLFDDVAGIEEAKEELQEVVTF-LKNSERFTAVGARIPKGVLLVGPPGTGKTL 222

Query: 198 LAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKR 257
           LAKA+A E    F  + GSE V+ F+G GA  VRD+FK AKE +PCI+FIDEIDAV  +R
Sbjct: 223 LAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFIDEIDAVGRQR 282

Query: 258 TESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEIS 317
              + GG+ E ++TL QLL EMDGF+    + IIAATNRPD+LD A+ RPGRFDR I + 
Sbjct: 283 GAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDAALTRPGRFDRQIIVD 342

Query: 318 MPDEDGRLEILKIHTEKMNL-KGVDLREVAKIAENMVGADLKAVCTEAGMFAIREEREFI 376
            PD  GRLEILK+H     L + V L  +A+      GADL  +  EA +   R  ++ I
Sbjct: 343 APDIKGRLEILKVHARNKKLAEDVSLDVIARRTPGFAGADLANLLNEAAILTARRRKDAI 402

Query: 377 KMDDFREAISKITGKKE 393
            + +  +A+ ++    E
Sbjct: 403 TLTEIDDAVDRVVAGME 419