Pairwise Alignments

Query, 407 a.a., proteasome-activating nucleotidase from Methanococcus maripaludis S2

Subject, 613 a.a., FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41 from Synechococcus elongatus PCC 7942

 Score =  237 bits (605), Expect = 6e-67
 Identities = 123/259 (47%), Positives = 169/259 (65%), Gaps = 2/259 (0%)

Query: 137 MEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKT 196
           +++E +  ++F D+ G++    ++ EVV+  LKN + F  VG   PKGVLL GPPGTGKT
Sbjct: 147 VQMEPQTQVTFNDVAGIDQAKLELTEVVDF-LKNADRFTAVGAQIPKGVLLVGPPGTGKT 205

Query: 197 LLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASK 256
           LLAKAVA E    F  + GSE V+ F+G GA  VRD+F+ AK  +PCI+FIDEIDAV  +
Sbjct: 206 LLAKAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKASAPCIVFIDEIDAVGRQ 265

Query: 257 RTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEI 316
           R   L GG+ E ++TL QLL EMDGF+    + I+AATNRPD+LD A++RPGRFDR + +
Sbjct: 266 RGAGLGGGNDEREQTLNQLLTEMDGFEGNSGIIIVAATNRPDVLDAALMRPGRFDRQVVV 325

Query: 317 SMPDEDGRLEILKIHTEKMNL-KGVDLREVAKIAENMVGADLKAVCTEAGMFAIREEREF 375
             PD +GRLEIL++H    +L K +DL ++A+      GADL  +  EA + A R     
Sbjct: 326 DRPDYNGRLEILRVHARGKSLSKDIDLDKIARRTPGFTGADLSNLLNEAAILAARRSLAE 385

Query: 376 IKMDDFREAISKITGKKEK 394
           I MD+  +AI ++    EK
Sbjct: 386 ISMDEVNDAIDRVLAGPEK 404