Pairwise Alignments

Query, 407 a.a., proteasome-activating nucleotidase from Methanococcus maripaludis S2

Subject, 371 a.a., AAA family ATPase from Methanococcus maripaludis JJ

 Score =  157 bits (396), Expect = 6e-43
 Identities = 106/282 (37%), Positives = 162/282 (57%), Gaps = 25/282 (8%)

Query: 122 IVEVLPKE-----KDYRAMAMEIEEKP-------DISFEDIGGLNNQIRDIKEVVELPLK 169
           +V + PKE     KD     +E   KP       + +FE++ G  +  +  K V++  L+
Sbjct: 89  VVSLYPKEGGIITKD-TLFKLENNSKPQNSPKFKETTFEEVVGQLDAKKKCKIVIKY-LE 146

Query: 170 NPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKL 229
           NPELF   G   PK +L YGPPGTGKT+LA+A+A ET+     +  +EL+   +G+G+K 
Sbjct: 147 NPELF---GEWAPKNILFYGPPGTGKTMLARALATETDVPLYLIKATELIGDHVGDGSKQ 203

Query: 230 VRDVFKLAKEKSPCIIFIDEIDAVA-SKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDV 288
           +  +++ A E +P IIFIDE+DA+A S++ +SL G   +V   +  LL E+DG  +   V
Sbjct: 204 IESLYENASENTPSIIFIDELDAIALSRQFQSLRG---DVSEVVNALLTELDGIKNNLGV 260

Query: 289 KIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKMNLK-GVDLREVAK 347
             IAATN P++LD AI    RF+  IE  MPD++ RL+I++++ EKM +    DL++  +
Sbjct: 261 VTIAATNNPEMLDNAI--RSRFEEEIEFKMPDDNERLKIIELYVEKMPIAVNADLKKYVE 318

Query: 348 IAENMVGADLKAVCTEAGMF-AIREEREFIKMDDFREAISKI 388
             + M G  +K    +  +  AI E+RE I   D  E I KI
Sbjct: 319 KTKGMNGRTIKEKFLKPALHKAILEDRESITQKDLDEIIKKI 360