Pairwise Alignments

Query, 407 a.a., proteasome-activating nucleotidase from Methanococcus maripaludis S2

Subject, 680 a.a., ATPase, AAA family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 53.5 bits (127), Expect = 2e-11
 Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 10/130 (7%)

Query: 182 PKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKS 241
           P  V+L GPPGTGKT     +A       + +  S+++ K++G+  + +  +F+ A  + 
Sbjct: 476 PIRVMLSGPPGTGKTAWVHHLAETHGFELMHIKCSDVLSKYVGDSEQNIARLFRDAHRQQ 535

Query: 242 PCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILD 301
             ++ IDE+D++ SKR       D       +QL+ E+        + + AATN    +D
Sbjct: 536 K-LMLIDEVDSLLSKR-------DSAQALHEVQLVNELISQLECNTLPVFAATNALASID 587

Query: 302 PAILRPGRFD 311
            A++R  RFD
Sbjct: 588 SAVMR--RFD 595



 Score = 44.7 bits (104), Expect = 9e-09
 Identities = 48/212 (22%), Positives = 89/212 (41%), Gaps = 34/212 (16%)

Query: 119 TLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVG 178
           ++ + + L    D+ A  +    +   S    G +N  +  +   +    K P     VG
Sbjct: 174 SILVSQKLTSAVDFLAPMLSKSPEAQFSLSQFGHVNTDL--LANYLAAITKKPS----VG 227

Query: 179 IVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRV-----VGSELVKKFIGEGAKL---- 229
           +     +LLYG  GTGKT LA+ +A     + + V     +GS+     I +   +    
Sbjct: 228 V----NILLYGKAGTGKTELARTLAKTIKRNLLEVQSQQLIGSQYRSDSITKATSIRLVH 283

Query: 230 VRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVK 289
           +  +  L    +  ++ +DE +A+  +  E  +      +  LMQ L        +  V 
Sbjct: 284 LSLLQGLLAHSNDSLLLVDECEALFVQADEQYS------KEQLMQAL-------EQNPVP 330

Query: 290 IIAATNRPDILDPAILRPGRFDRIIEISMPDE 321
            I  TN   +L+P+ +R  RF  ++E+ +PDE
Sbjct: 331 AIWITNHVGLLEPSFIR--RFKLVMEVPVPDE 360