Pairwise Alignments

Query, 407 a.a., proteasome-activating nucleotidase from Methanococcus maripaludis S2

Subject, 495 a.a., ATPase, AAA family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  104 bits (260), Expect = 5e-27
 Identities = 75/243 (30%), Positives = 123/243 (50%), Gaps = 9/243 (3%)

Query: 147 FEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYET 206
           F  I GL+N  + +K+          +     I  PKGVLL G  G+GK+L AKAVA   
Sbjct: 232 FSQIAGLHNLKKWLKQRAPAAHSPQGVSAAAQIDTPKGVLLLGVQGSGKSLAAKAVAGVW 291

Query: 207 NASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDR 266
               +R+    L  K+IGE  K +R+  +LA   SPCI++IDEI+   S  + S  G   
Sbjct: 292 QRPLLRLDMGALYNKYIGETEKNLRNALELADMMSPCILWIDEIEKGLS-GSNSDQGIST 350

Query: 267 EVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLE 326
            +  TL+  +AE      + +V ++A  N    L P ++R GR D I  + +PDE  R  
Sbjct: 351 RILGTLLTWMAE-----RKSEVFVVATANDIQALPPELMRKGRMDEIFFVDLPDETIRKA 405

Query: 327 ILKIHTEK--MNLKGVDLREVAKIAENMVGADLKAVCTEAGMFAIREEREFIKMDDFREA 384
           I  IH ++  +++  +DL ++++ ++   GA+++     A M++ R     +  D   E 
Sbjct: 406 IFLIHCQRRGIDVSRLDLAQLSRHSQGFSGAEIEQAVI-AAMYSARSLGRTLDQDLLLEE 464

Query: 385 ISK 387
           ++K
Sbjct: 465 LTK 467



 Score = 25.0 bits (53), Expect = 0.005
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 325 LEILKIHTEKMNLKGVDLREVAKIAENMVGADL 357
           LE+ K+ T+ + L  VD + V K+AEN+ G  L
Sbjct: 153 LEVDKVRTQGIPLN-VDDKAVVKLAENLRGVTL 184