Pairwise Alignments

Query, 407 a.a., proteasome-activating nucleotidase from Methanococcus maripaludis S2

Subject, 657 a.a., membrane protease FtsH catalytic subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  223 bits (569), Expect = 1e-62
 Identities = 120/263 (45%), Positives = 169/263 (64%), Gaps = 2/263 (0%)

Query: 140 EEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLA 199
           E++   +F D+ G +    ++KE+V+  L++P  F+K+G   P GVL+ GPPGTGKTLLA
Sbjct: 154 EDQIKTTFADVAGCDEAKEEVKELVDY-LRDPTKFQKLGGRIPTGVLMVGPPGTGKTLLA 212

Query: 200 KAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTE 259
           KA+A E+   F  + GS+ V+ F+G GA  VRD+F+ AK+ +PCIIFIDEIDAV  +R  
Sbjct: 213 KAIAGESKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKSAPCIIFIDEIDAVGRQRGA 272

Query: 260 SLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMP 319
            L GG  E ++TL Q+L EMDGF+    + +IAATNRPD+LD A+LRPGRFDR + + +P
Sbjct: 273 GLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDSALLRPGRFDRQVVVGLP 332

Query: 320 DEDGRLEILKIHTEKMNL-KGVDLREVAKIAENMVGADLKAVCTEAGMFAIREEREFIKM 378
           D  GR +ILK+H  K+ L + V    +A+      GADL  +  EA +FA R  R  + M
Sbjct: 333 DVRGREQILKVHMRKVPLSEDVKASVIARGTPGFSGADLANLVNEAALFAARGNRRVVGM 392

Query: 379 DDFREAISKITGKKEKCSYDMPQ 401
           ++F  A  KI    E+ S  M +
Sbjct: 393 EEFERAKDKIMMGAERRSMVMSE 415