Pairwise Alignments

Query, 240 a.a., ABC transporter substrate-binding protein from Methanococcus maripaludis S2

Subject, 250 a.a., ABC transporter substrate-binding protein from Methanococcus maripaludis JJ

 Score =  139 bits (349), Expect = 7e-38
 Identities = 83/239 (34%), Positives = 138/239 (57%), Gaps = 9/239 (3%)

Query: 2   KNAVIFSVLLVITS-CACISSDSNTTTLKDGVLTVGVFKYVPPAVYEENGELKGYEVELI 60
           K  +I ++ L+I S C   +++SN       VL VG    + P  Y E+GE KG+EVELI
Sbjct: 5   KILIISTIFLIIFSGCTEKNTESNNR-----VLNVGACTDLAPTSYLEDGEFKGFEVELI 59

Query: 61  SEIAERMDLKVEYKEYMFSDLLNAVANNEVDCAISDIAVTPEREKIVSFSRAYSKTDIIL 120
            EI++R+DLK E+  Y FS+LL+AV+   VDC I  I  TPER+  + FSR Y+ T   +
Sbjct: 60  YEISKRLDLKPEFIAYSFSELLDAVSEGNVDCGIGYIGRTPERQLKMDFSRQYAYTYSSI 119

Query: 121 VVPKDSDIEKLTDIIGQKVGVTAGTIDDDKSSELLKSIDFQVCRYNNHDELYDALESGNV 180
           +V ++S+   +  +  + VGV   +I++     L KS+DF +  Y N ++++  L SG +
Sbjct: 120 LVKQNSECVGIKCLEHKSVGVLKDSIEEKWLESLSKSMDFDIISYENQNDIHKDLLSGKI 179

Query: 181 DAIISEE-NNFESVQ--NSSINYLDEPIATVYCGIAVNKDNKELRLKINDIILELEQEG 236
           D+ +++   +   +Q  NS +  + +    +Y  IA++  N EL+  I+  +LE+E +G
Sbjct: 180 DSEVTDHLTSLYLIQKYNSELKIIGDKFDIIYIAIAIDNTNPELKKSIDAALLEMENDG 238



 Score = 25.4 bits (54), Expect = 0.001
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 116 TDIILVVPKDSDIEKLTDIIGQKVGVTAGTID-DDKSSELLKSIDFQVCRYNNHDELYDA 174
           T + L+   +S+++    IIG K  +    I  D+ + EL KSID  +    N   L   
Sbjct: 188 TSLYLIQKYNSELK----IIGDKFDIIYIAIAIDNTNPELKKSIDAALLEMENDGTLVKL 243

Query: 175 LESGNVD 181
            E  N+D
Sbjct: 244 KEKWNID 250