Pairwise Alignments

Query, 482 a.a., energy conserving hydrogenase EhbF from Methanococcus maripaludis S2

Subject, 496 a.a., proton-translocating NADH-quinone oxidoreductase, chain M from Synechococcus elongatus PCC 7942

 Score =  112 bits (281), Expect = 2e-29
 Identities = 106/399 (26%), Positives = 182/399 (45%), Gaps = 41/399 (10%)

Query: 38  LLLALPFIGSYGI-YNFGAHGIENGLISGISYLYTPVKQLIITVIMLIGSLVLITGLG-E 95
           LL  LP+I   G+ Y  G  G+   L+ G++ L T                ++I GL  +
Sbjct: 59  LLEQLPWIEQLGLGYRLGVDGLSLPLV-GLNALLT---------------FLIIAGLERQ 102

Query: 96  KKSSGLFVALMLMGLASVSAVVMADDLFNIYVFYEIAAIAQTGLVIASGTEKAYRSAFRY 155
           ++ S L+  LML+   +VS   +A DL   +VFYE+  I    L+   G  +   +A ++
Sbjct: 103 EQRSRLYYGLMLLLSGAVSGAFLAQDLLLFFVFYEVELIPLYLLISIWGGARRGYAATKF 162

Query: 156 LILGNFAGSILLLGVSMLLAATGTLNITDMHNFLLNNPATPTIYGGLLMLIIGLCYGSGL 215
           LI    +G++LL+G   L   +G  +     N     P    +    L+++I + +G   
Sbjct: 163 LIYTALSGALLLIGFLALTILSGAGSFAYNPNLAAVLPIAQQV---TLLVLILVAFGIKT 219

Query: 216 P--PFHTVKADIYARAKPHVAAMLQTYSKFVLVALLLVIFKLFG-GLSYFASAHGV---- 268
           P  PFHT   D +  A   V+ ML        V L L  + +   GL  F     +    
Sbjct: 220 PIVPFHTWLPDAHVEASTPVSMMLAG------VLLKLGTYGILRFGLGLFPQVWPIVAPW 273

Query: 269 LIGLSVLGMVFGVVMALLQTDYKKLLAYHAISQGGYVAAGIALGTPLGIVAGIFHAINHV 328
           L GL+V+  ++G + A++Q D KK++AY +I   GY+    A  TPL ++  +   I+H 
Sbjct: 274 LAGLAVVSTLYGSLSAIVQQDMKKMVAYSSIGHMGYILLAAAAATPLSLLGAVCQMISHG 333

Query: 329 IYKSALFLGAHIV-ERRKEGNLNKLGGLLPV---IPATAFMVLCAKLAISGVPPFNGFQS 384
           +  + LFL    V  R    +L  L GLL     +P    +++ A +A  G+P   GF +
Sbjct: 334 LISALLFLEVGFVYSRTGTRDLRVLQGLLTPERGLPIVGSLMILAVMASGGLPGMVGFIA 393

Query: 385 KLLLAEAAMNVNMPELAIIMI---LVSIGTFVSMMKAFY 420
           + ++   + +    +    M+   L S+   + + +AF+
Sbjct: 394 EFMIFRGSFSTFTVQTLFCMVGTGLTSVYFLLLVNRAFF 432



 Score = 33.9 bits (76), Expect = 1e-05
 Identities = 50/233 (21%), Positives = 85/233 (36%), Gaps = 38/233 (16%)

Query: 30  PMTLIMAILLLALPFIGSYGIYNFGAHGIENGLISGISYLYTPVKQLIITVIMLIGSLVL 89
           P+++++A +LL L   G+YGI  FG      GL   +  +  P    +  V  L GSL  
Sbjct: 238 PVSMMLAGVLLKL---GTYGILRFGL-----GLFPQVWPIVAPWLAGLAVVSTLYGSL-- 287

Query: 90  ITGLGEKKSSGLFVALMLMGLASVSAVVMADDLFNIYVFYEIAAIAQTGLVIASGTEKAY 149
                                    + ++  D+  +  +  I  +    L  A+ T  + 
Sbjct: 288 -------------------------SAIVQQDMKKMVAYSSIGHMGYILLAAAAATPLSL 322

Query: 150 RSAFRYLILGNFAGSILLLGVSMLLAATGTLNITDMHNFLLNNPATPTIYGGLLMLIIGL 209
             A   +I      ++L L V  + + TGT ++  +   L      P +  G LM++  +
Sbjct: 323 LGAVCQMISHGLISALLFLEVGFVYSRTGTRDLRVLQGLLTPERGLPIV--GSLMILAVM 380

Query: 210 CYGSGLPPFHTVKADIYARAKPHVAAMLQTYSKFVLVALLLVIFKLFGGLSYF 262
             G GLP      A+            +QT    V   L  V F L    ++F
Sbjct: 381 ASG-GLPGMVGFIAEFMIFRGSFSTFTVQTLFCMVGTGLTSVYFLLLVNRAFF 432