Pairwise Alignments

Query, 482 a.a., energy conserving hydrogenase EhbF from Methanococcus maripaludis S2

Subject, 515 a.a., proton-translocating NADH-quinone oxidoreductase, chain M (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  114 bits (286), Expect = 6e-30
 Identities = 136/507 (26%), Positives = 224/507 (44%), Gaps = 58/507 (11%)

Query: 2   NLLPLIVVFPMFVAIIFN-YLNGKDKLIRPMTLIMAILLLALPFIGS------YGIYNFG 54
           NLL +I   P   A+I   +L G D+  R     +A++  ++ FI S      +   + G
Sbjct: 3   NLLSIITFIPAVAALILALFLRGDDEAARRNAKWLALIATSVTFILSLFLLAGFDPQDTG 62

Query: 55  AHGIENG-LISGISYLYTPVKQLIITVIMLIGSLVLITGLG----EKKSSGLFVALMLMG 109
              +E    + G++Y    V  + I  +ML   L+ IT       E +     +A +++ 
Sbjct: 63  FQFVEERPWVLGLTYKMG-VDGISILFVMLTTFLMPITIASCWTVETRVKEYMIAFLVLE 121

Query: 110 LASVSAVVMADDLFNIYVFYEIAAIAQTGLV-IASGTEKAYRSAFRYLILGNFAGSILLL 168
              +  V  A DL   Y+F+E   I    ++ I  G  + Y S F++ +   F GS+L+L
Sbjct: 122 TLMIG-VFTALDLVLFYLFFEAGLIPMFLIIGIWGGANRIYAS-FKFFLY-TFLGSVLML 178

Query: 169 GVSMLLAATGTLNITDMHNFLLNNPATPTI-------YGG---LLMLIIGLCYGSGLP-- 216
               ++A       TD+   L +   T TI        GG   LL L     +   +P  
Sbjct: 179 VA--MVAMYVDAGTTDIPTLLTHQFGTTTIEVLGIHILGGMQVLLWLAFFASFAVKMPMW 236

Query: 217 PFHTVKADIYARAKPHVAAMLQTYSKFVLVALLLVI----FKLFGGLSYFASAHGVL--- 269
           P HT   D + +A         T    VL A+LL +    F  F  L  F  A  ++   
Sbjct: 237 PVHTWLPDAHVQAP--------TAGSVVLAAILLKMGGYGFLRFS-LPMFPVASDIMAPL 287

Query: 270 -IGLSVLGMVFGVVMALLQTDYKKLLAYHAISQGGYVAAGIALGTPLGIVAGIFHAINHV 328
            + LS + +V+  ++AL+QTD KKL+AY +++  G+V  GI      G+   IF  I+H 
Sbjct: 288 VLWLSAIAIVYTSLVALVQTDMKKLIAYSSVAHMGFVTMGIFAANQQGVDGAIFQMISHG 347

Query: 329 IYKSALFLGAHIV-ERRKEGNLNKLGGLLPVIPATAFMVLCAKLAISGVPPFNGFQSKLL 387
               ALFL   ++ +R     ++  GGL+  +PA A + +   +A  G+P  +GF  + L
Sbjct: 348 FISGALFLCVGVIYDRMHTREIDAYGGLVNRMPAYALVFMLFTMANVGLPGTSGFVGEFL 407

Query: 388 LAEAAMNVNMPELAIIMILVSIGTFVSMMKAFYL---IYLKPCSQEQLEEYKKAKPSKYA 444
                  VN      +  + + G  +S   A +L   +      +E L+        + A
Sbjct: 408 TLVGVFQVN----TWVAFVAATGVILSAGYALWLYRRVVFGDLIKESLKTINDMTLRERA 463

Query: 445 VFSLAVLTFLCILLGIFPNLATDIIYP 471
           +F  A L  + +LLG++P+L TDII P
Sbjct: 464 IF--APLIVMTLLLGVYPSLVTDIIGP 488