Pairwise Alignments

Query, 481 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 166 a.a., NapF ferredoxin component of periplasmic nitrate reductase from Sinorhizobium meliloti 1021

 Score = 63.2 bits (152), Expect = 6e-15
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 16/120 (13%)

Query: 266 CINCGLCVDKCPSNALRFENGKILYD--PKTCTLCNTCVKECPQGVRINKGE------FV 317
           C  CG C D CP++ +R  + +   D     CT C  C + CP+ V   + +       +
Sbjct: 37  CTGCGRCADACPTHIIRVIDDRPALDFFIAECTFCGQCAELCPEPVFTGRSQQFPHVAMI 96

Query: 318 DGGCVL-----CELCIKECPEDAISIKERSK---FTSIDKEECIACGTCSMVCPNDAITV 369
              C+      C+ C   CP +AI  + R+       +++E C  CG C  VCP  AI +
Sbjct: 97  GESCLARNRTDCQACRDACPTEAIRFRPRAGGPFLPELNEELCTGCGACLSVCPVAAIGI 156



 Score = 59.7 bits (143), Expect = 7e-14
 Identities = 43/137 (31%), Positives = 56/137 (40%), Gaps = 29/137 (21%)

Query: 350 EECIACGTCSMVCPNDAITVVID--SLNFSGNKVHSKVIFNDNCVICEKCAIHCPRDVIE 407
           E C  CG C+  CP   I V+ D  +L+F          F   C  C +CA  CP  V  
Sbjct: 35  EACTGCGRCADACPTHIIRVIDDRPALDF----------FIAECTFCGQCAELCPEPVFT 84

Query: 408 NTSG---HKKVVDRENSYIRTDNDYCVKCGLCTIICPNDAID---------KGEINTEKC 455
             S    H  ++  E+   R   D    C  C   CP +AI            E+N E C
Sbjct: 85  GRSQQFPHVAMIG-ESCLARNRTD----CQACRDACPTEAIRFRPRAGGPFLPELNEELC 139

Query: 456 EYCSACVNICPTRAIRI 472
             C AC+++CP  AI I
Sbjct: 140 TGCGACLSVCPVAAIGI 156



 Score = 55.8 bits (133), Expect = 1e-12
 Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 21/124 (16%)

Query: 13  EECEDCKNKEISKCMEVCPTNAIKMIDGK------AFSCITCGTCAKECPTGAI--KKNE 64
           E C  C      +C + CPT+ I++ID +         C  CG CA+ CP      +  +
Sbjct: 35  EACTGC-----GRCADACPTHIIRVIDDRPALDFFIAECTFCGQCAELCPEPVFTGRSQQ 89

Query: 65  YGGYYVNRKLC-----TGCGICKNVCPIDIIDIREDSTGKSYP---TGMCVMCGLCTTEC 116
           +    +  + C     T C  C++ CP + I  R  + G   P     +C  CG C + C
Sbjct: 90  FPHVAMIGESCLARNRTDCQACRDACPTEAIRFRPRAGGPFLPELNEELCTGCGACLSVC 149

Query: 117 PYNA 120
           P  A
Sbjct: 150 PVAA 153



 Score = 53.1 bits (126), Expect = 6e-12
 Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 12/120 (10%)

Query: 199 AEMVDGCTRCNICNEVCPVDAIE-------YGQVTENCILCGNCISKCPKDVLEISEFKV 251
           AE ++ CT C  C + CP   I               C  CG C   CP+ V      + 
Sbjct: 31  AEGLEACTGCGRCADACPTHIIRVIDDRPALDFFIAECTFCGQCAELCPEPVFTGRSQQF 90

Query: 252 VKTKEDVKAKPEKHCINCGLCVDKCPSNALRFE---NGKIL--YDPKTCTLCNTCVKECP 306
                  ++   ++  +C  C D CP+ A+RF     G  L   + + CT C  C+  CP
Sbjct: 91  PHVAMIGESCLARNRTDCQACRDACPTEAIRFRPRAGGPFLPELNEELCTGCGACLSVCP 150



 Score = 53.1 bits (126), Expect = 6e-12
 Identities = 41/161 (25%), Positives = 56/161 (34%), Gaps = 48/161 (29%)

Query: 75  CTGCGICKNVCPIDIIDIREDSTGKSYPTGMCVMCGLCTTECPYNARLYFDPSSLKNTKN 134
           CTGCG C + CP  II + +D     +    C  CG C   CP                 
Sbjct: 37  CTGCGRCADACPTHIIRVIDDRPALDFFIAECTFCGQCAELCP----------------- 79

Query: 135 KMLMERYSTIFKMMGKTYEFPEPKHVKIVKPAERKLRHSISIDSKKCVECGKCIYLCPKD 194
                    +F   G++ +FP   HV ++           S  ++   +C  C   CP +
Sbjct: 80  -------EPVFT--GRSQQFP---HVAMIGE---------SCLARNRTDCQACRDACPTE 118

Query: 195 TIIEAEMVDG----------CTRCNICNEVCPVDAIEYGQV 225
            I       G          CT C  C  VCPV AI   +V
Sbjct: 119 AIRFRPRAGGPFLPELNEELCTGCGACLSVCPVAAIGIREV 159



 Score = 46.2 bits (108), Expect = 8e-10
 Identities = 33/136 (24%), Positives = 49/136 (36%), Gaps = 11/136 (8%)

Query: 321 CVLCELCIKECPEDAISIKERSKFTSIDKEECIACGTCSMVCPNDAITVVIDSLNFSGNK 380
           C  C  C   CP   I + +          EC  CG C+ +CP    T    S  F    
Sbjct: 37  CTGCGRCADACPTHIIRVIDDRPALDFFIAECTFCGQCAELCPEPVFTG--RSQQFPHVA 94

Query: 381 VHSKVIFNDNCVICEKCAIHCPRDVI--ENTSGHKKVVDRENSYIRTDNDYCVKCGLCTI 438
           +  +     N   C+ C   CP + I     +G   + +        + + C  CG C  
Sbjct: 95  MIGESCLARNRTDCQACRDACPTEAIRFRPRAGGPFLPE-------LNEELCTGCGACLS 147

Query: 439 ICPNDAIDKGEINTEK 454
           +CP  AI   E+  E+
Sbjct: 148 VCPVAAIGIREVEWER 163



 Score = 43.5 bits (101), Expect = 5e-09
 Identities = 29/121 (23%), Positives = 43/121 (35%), Gaps = 23/121 (19%)

Query: 181 CVECGKCIYLCPKDTIIEAE-------MVDGCTRCNICNEVCPVDAI--------EYGQV 225
           C  CG+C   CP   I   +        +  CT C  C E+CP                +
Sbjct: 37  CTGCGRCADACPTHIIRVIDDRPALDFFIAECTFCGQCAELCPEPVFTGRSQQFPHVAMI 96

Query: 226 TENCIL-----CGNCISKCPKDVLEISEFKVVKTKEDVKAKPEKHCINCGLCVDKCPSNA 280
            E+C+      C  C   CP + +    F+       +    E+ C  CG C+  CP  A
Sbjct: 97  GESCLARNRTDCQACRDACPTEAIR---FRPRAGGPFLPELNEELCTGCGACLSVCPVAA 153

Query: 281 L 281
           +
Sbjct: 154 I 154



 Score = 43.1 bits (100), Expect = 7e-09
 Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 23/92 (25%)

Query: 180 KCVECGKCIYLCPKDT-------------IIEAEMVDGCTRCNICNEVCPVDAIEYGQVT 226
           +C  CG+C  LCP+               I E+ +    T C  C + CP +AI +    
Sbjct: 67  ECTFCGQCAELCPEPVFTGRSQQFPHVAMIGESCLARNRTDCQACRDACPTEAIRFRPRA 126

Query: 227 ----------ENCILCGNCISKCPKDVLEISE 248
                     E C  CG C+S CP   + I E
Sbjct: 127 GGPFLPELNEELCTGCGACLSVCPVAAIGIRE 158