Pairwise Alignments

Query, 481 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 189 a.a., electron transport complex protein RnfB (RefSeq) from Shewanella amazonensis SB2B

 Score = 51.2 bits (121), Expect = 3e-11
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 8/90 (8%)

Query: 167 ERKLRHSISIDSKKCVECGKCIYLCPKDTIIEAE------MVDGCTRCNICNEVCPVDAI 220
           E++++    I   +C+ C KCI  CP D I+ A       +   CT C++C E CPVD I
Sbjct: 100 EQQVKKVAYIREDECIGCTKCIQACPVDAIVGAGKLMHTVITQDCTGCDLCVEPCPVDCI 159

Query: 221 EYGQVTENCILCGNCISKCPKDVLEISEFK 250
           +   VT++       +S  P  V+++ E K
Sbjct: 160 DMLPVTQDIKTWNWKLSAIP--VMQLEEDK 187



 Score = 42.4 bits (98), Expect = 1e-08
 Identities = 19/48 (39%), Positives = 25/48 (52%)

Query: 45  CITCGTCAKECPTGAIKKNEYGGYYVNRKLCTGCGICKNVCPIDIIDI 92
           CI C  C + CP  AI       + V  + CTGC +C   CP+D ID+
Sbjct: 114 CIGCTKCIQACPVDAIVGAGKLMHTVITQDCTGCDLCVEPCPVDCIDM 161



 Score = 42.0 bits (97), Expect = 2e-08
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 9/76 (11%)

Query: 332 PEDAISIKERSKFTSIDKEECIACGTCSMVCPNDAITVVIDSLNFSGNKVHSKVIFNDNC 391
           P  A + ++  K   I ++ECI C  C   CP DAI         +G  +H+  +   +C
Sbjct: 94  PLSATTEQQVKKVAYIREDECIGCTKCIQACPVDAIV-------GAGKLMHT--VITQDC 144

Query: 392 VICEKCAIHCPRDVIE 407
             C+ C   CP D I+
Sbjct: 145 TGCDLCVEPCPVDCID 160



 Score = 40.0 bits (92), Expect = 6e-08
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 17/90 (18%)

Query: 233 GNCISKCPKD----VLEISEFKVVK-------TKEDVKAKP---EKHCINCGLCVDKCPS 278
           G+ I+KCP      + +I+E   V+       T++ VK      E  CI C  C+  CP 
Sbjct: 67  GDQINKCPPGGTATMEKIAELMGVEPQPLSATTEQQVKKVAYIREDECIGCTKCIQACPV 126

Query: 279 NALRFENGKILYDPKT--CTLCNTCVKECP 306
           +A+    GK+++   T  CT C+ CV+ CP
Sbjct: 127 DAI-VGAGKLMHTVITQDCTGCDLCVEPCP 155



 Score = 38.1 bits (87), Expect = 2e-07
 Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 421 SYIRTDNDYCVKCGLCTIICPNDAIDKG-----EINTEKCEYCSACVNICPTRAIRI--- 472
           +YIR D   C+ C  C   CP DAI         + T+ C  C  CV  CP   I +   
Sbjct: 107 AYIREDE--CIGCTKCIQACPVDAIVGAGKLMHTVITQDCTGCDLCVEPCPVDCIDMLPV 164

Query: 473 ---YRTWNEK 479
               +TWN K
Sbjct: 165 TQDIKTWNWK 174



 Score = 37.4 bits (85), Expect = 4e-07
 Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 7/111 (6%)

Query: 261 KPEKHCINCGLCVDKCP-SNALRFENGKILYDPKTCTLCNTCVKECPQGVRINKGEFVDG 319
           +P    I  G  ++KCP       E    L   +   L  T  ++  +   I + E    
Sbjct: 58  RPYAEAIAGGDQINKCPPGGTATMEKIAELMGVEPQPLSATTEQQVKKVAYIREDE---- 113

Query: 320 GCVLCELCIKECPEDAISIKERSKFTSIDKEECIACGTCSMVCPNDAITVV 370
            C+ C  CI+ CP DAI    +   T I  ++C  C  C   CP D I ++
Sbjct: 114 -CIGCTKCIQACPVDAIVGAGKLMHTVIT-QDCTGCDLCVEPCPVDCIDML 162



 Score = 36.2 bits (82), Expect = 9e-07
 Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 11/98 (11%)

Query: 351 ECIACGTCSMVCPNDAITVVIDSLNFSGNKVHSKVIF--NDNCVICEKCAIHCPRDVIEN 408
           +C   GT +M    + + V    L+ +  +   KV +   D C+ C KC   CP D I  
Sbjct: 72  KCPPGGTATMEKIAELMGVEPQPLSATTEQQVKKVAYIREDECIGCTKCIQACPVDAIVG 131

Query: 409 TSGHKKVVDRENSYIRTDNDYCVKCGLCTIICPNDAID 446
                  V  ++         C  C LC   CP D ID
Sbjct: 132 AGKLMHTVITQD---------CTGCDLCVEPCPVDCID 160



 Score = 34.7 bits (78), Expect = 3e-06
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 69  YVNRKLCTGCGICKNVCPIDIIDIREDSTGKSYPTGMCVMCGLCTTECP 117
           Y+    C GC  C   CP+D I +       +  T  C  C LC   CP
Sbjct: 108 YIREDECIGCTKCIQACPVDAI-VGAGKLMHTVITQDCTGCDLCVEPCP 155



 Score = 34.7 bits (78), Expect = 3e-06
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 7/55 (12%)

Query: 227 ENCILCGNCISKCPKDVLEISEFKVVKTKEDVKAKPEKHCINCGLCVDKCPSNAL 281
           + CI C  CI  CP D + +   K++ T         + C  C LCV+ CP + +
Sbjct: 112 DECIGCTKCIQACPVDAI-VGAGKLMHTVIT------QDCTGCDLCVEPCPVDCI 159