Pairwise Alignments

Query, 481 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 158 a.a., ferredoxin-type protein NapF (RefSeq) from Shewanella loihica PV-4

 Score = 58.2 bits (139), Expect = 2e-13
 Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 23/134 (17%)

Query: 198 EAEMVDGCTRCNICNEVCPVDAIEYGQ--------VTENCILCGNCISKCPKDVLEISEF 249
           + E  D CTRC+ C + C    +  G           + C  CG C   CP+ +   +E 
Sbjct: 29  DVEFTDICTRCDKCIDACETKILSRGDGGFPEVSFSQDECTFCGACAKVCPEPLFTDTE- 87

Query: 250 KVVKTKEDVKAKPEKHC-----INCGLCVDKCPSNALRF-----ENGKILYDPKTCTLCN 299
              +T   +KA  ++ C     I C  C D C   A+ F     +  K + D + C  C 
Sbjct: 88  ---ETPWQIKASIDQSCLANSGIWCQTCKDACDPRAISFTASIGQAPKPVIDTEMCNGCG 144

Query: 300 TCVKECP-QGVRIN 312
            CV  CP Q ++++
Sbjct: 145 ACVAPCPNQSIKLS 158



 Score = 47.8 bits (112), Expect = 3e-10
 Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 22/128 (17%)

Query: 295 CTLCNTCVKECPQGVRINKGE-------FVDGGCVLCELCIKECPEDAISIKERSKF--- 344
           CT C+ C+  C   + +++G+       F    C  C  C K CPE   +  E + +   
Sbjct: 36  CTRCDKCIDACETKI-LSRGDGGFPEVSFSQDECTFCGACAKVCPEPLFTDTEETPWQIK 94

Query: 345 TSIDKEECIA-----CGTCSMVCPNDAITVVIDSLNFSGNKVHSKVIFNDNCVICEKCAI 399
            SID + C+A     C TC   C   AI     S   S  +    VI  + C  C  C  
Sbjct: 95  ASID-QSCLANSGIWCQTCKDACDPRAI-----SFTASIGQAPKPVIDTEMCNGCGACVA 148

Query: 400 HCPRDVIE 407
            CP   I+
Sbjct: 149 PCPNQSIK 156



 Score = 45.1 bits (105), Expect = 2e-09
 Identities = 33/111 (29%), Positives = 41/111 (36%), Gaps = 18/111 (16%)

Query: 25  KCMEVCPTNAIKMIDGK----AFS---CITCGTCAKECPTGAIKKNEYGGYYVNRKLCTG 77
           KC++ C T  +   DG     +FS   C  CG CAK CP       E   + +   +   
Sbjct: 41  KCIDACETKILSRGDGGFPEVSFSQDECTFCGACAKVCPEPLFTDTEETPWQIKASIDQS 100

Query: 78  C----GI----CKNVCPIDIIDIREDSTGKSYP---TGMCVMCGLCTTECP 117
           C    GI    CK+ C    I           P   T MC  CG C   CP
Sbjct: 101 CLANSGIWCQTCKDACDPRAISFTASIGQAPKPVIDTEMCNGCGACVAPCP 151



 Score = 42.4 bits (98), Expect = 1e-08
 Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 24/98 (24%)

Query: 174 ISIDSKKCVECGKCIYLCPKDTI---------IEAEMVDGCTR-----CNICNEVCPVDA 219
           +S    +C  CG C  +CP+            I+A +   C       C  C + C   A
Sbjct: 61  VSFSQDECTFCGACAKVCPEPLFTDTEETPWQIKASIDQSCLANSGIWCQTCKDACDPRA 120

Query: 220 IEY----GQV------TENCILCGNCISKCPKDVLEIS 247
           I +    GQ       TE C  CG C++ CP   +++S
Sbjct: 121 ISFTASIGQAPKPVIDTEMCNGCGACVAPCPNQSIKLS 158



 Score = 41.2 bits (95), Expect = 2e-08
 Identities = 36/140 (25%), Positives = 51/140 (36%), Gaps = 23/140 (16%)

Query: 343 KFTSIDKEECIACGTCSMVCPNDAITVVIDSLNFSGNKVHSKVIFN-DNCVICEKCAIHC 401
           +FT I    C  C  C   C    ++         G+    +V F+ D C  C  CA  C
Sbjct: 31  EFTDI----CTRCDKCIDACETKILS--------RGDGGFPEVSFSQDECTFCGACAKVC 78

Query: 402 PRDVIENTSGHKKVVDRENSYIRTDNDYCVKCGLCTIICPNDAID---------KGEINT 452
           P  +  +T      +          N   + C  C   C   AI          K  I+T
Sbjct: 79  PEPLFTDTEETPWQIKASIDQSCLANSG-IWCQTCKDACDPRAISFTASIGQAPKPVIDT 137

Query: 453 EKCEYCSACVNICPTRAIRI 472
           E C  C ACV  CP ++I++
Sbjct: 138 EMCNGCGACVAPCPNQSIKL 157



 Score = 23.9 bits (50), Expect = 0.004
 Identities = 8/17 (47%), Positives = 9/17 (52%)

Query: 45  CITCGTCAKECPTGAIK 61
           C  CG C   CP  +IK
Sbjct: 140 CNGCGACVAPCPNQSIK 156