Pairwise Alignments
Query, 481 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2
Subject, 558 a.a., 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) from Shewanella loihica PV-4
Score = 62.4 bits (150), Expect = 4e-14
Identities = 80/331 (24%), Positives = 117/331 (35%), Gaps = 52/331 (15%)
Query: 70 VNRKLCT-------GCGICKNVCPIDIIDIREDSTGKSYPTGMCVMCGLCTTECPYNARL 122
VN +C GC C N CP D I + +C G CT CP A
Sbjct: 185 VNSDICAHHRNGIDGCSRCLNFCPADAIASVDHKI--EIDPYLCHGAGSCTNACPTGAIS 242
Query: 123 YF--DPSSLKNTKNKMLMERYST-------IFKMMGKTYEFPEPKHVKIVKPAERKLRHS 173
Y P +L + NK++ S +F + + P E +
Sbjct: 243 YDLPTPQALHSYLNKLVTRFRSAAQTAPVILFHDASLGASLIGDELPGAILPVELEEITV 302
Query: 174 ISIDSKKCVECGKCIYLCPKDTIIEA----EMVDGCTRCNICNEVCP-------VDAIEY 222
S+D + +T A +M++G + NE+ V IE
Sbjct: 303 ASMDHWMAALAWGARQILVLNTEATAPTLTQMLNG--ELKLANEILDEMGQPQRVSVIEA 360
Query: 223 GQVTENCILCGNCISKCPKDVLEISEFKVVKTKEDVKAKPEKHCINCGLCVDKCPSNALR 282
Q+ + L S ++ EF TK + + H + D C S +
Sbjct: 361 KQIADLATLIEPSASW---PMIVPGEFAAT-TKRETLYEAIDHLNSQAASTDACLSKS-N 415
Query: 283 FENGKILYDPKTCTLCNTCVKECPQGVRINKGE-----FVDGGCVLCELCIKECPEDAIS 337
GK+ + CTLC +CV CP + GE FV+ CV C LC CPE IS
Sbjct: 416 IPYGKVSVNTDNCTLCLSCVSTCPTQALTDGGEKPALYFVEQACVQCGLCESACPEKVIS 475
Query: 338 IKERSKFTSIDKE-----------ECIACGT 357
+ + F + ++ ECI CGT
Sbjct: 476 LTPQINFDATARQSRQTLNEEAPFECIRCGT 506
Score = 55.5 bits (132), Expect = 5e-12
Identities = 69/292 (23%), Positives = 113/292 (38%), Gaps = 52/292 (17%)
Query: 24 SKCMEVCPTNAIKMIDGKA----FSCITCGTCAKECPTGAIKKN----EYGGYYVNRKLC 75
S+C+ CP +AI +D K + C G+C CPTGAI + + Y+N KL
Sbjct: 201 SRCLNFCPADAIASVDHKIEIDPYLCHGAGSCTNACPTGAISYDLPTPQALHSYLN-KLV 259
Query: 76 TGCGICKNVCPIDIID--------IREDSTGKSYPTGM----CVMCGLCTTECPYNAR-- 121
T P+ + I ++ G P + + AR
Sbjct: 260 TRFRSAAQTAPVILFHDASLGASLIGDELPGAILPVELEEITVASMDHWMAALAWGARQI 319
Query: 122 LYFDPSSLKNTKNKMLMERYSTIFKMMGKTYEFPEPKHVKIVKPAERKLRHSISID---S 178
L + + T +ML +++ E +P+ V +++ A++ + I+ S
Sbjct: 320 LVLNTEATAPTLTQMLNGELKLANEILD---EMGQPQRVSVIE-AKQIADLATLIEPSAS 375
Query: 179 KKCVECGKCIYLCPKDTIIEAEMVDGCTRCNICNEVC-PVDAIEYGQV---TENCILCGN 234
+ G+ ++T+ EA +D + C I YG+V T+NC LC +
Sbjct: 376 WPMIVPGEFAATTKRETLYEA--IDHLNSQAASTDACLSKSNIPYGKVSVNTDNCTLCLS 433
Query: 235 CISKCPKDVLEISEFKVVKTKEDVKAKP-----EKHCINCGLCVDKCPSNAL 281
C+S CP L D KP E+ C+ CGLC CP +
Sbjct: 434 CVSTCPTQAL-----------TDGGEKPALYFVEQACVQCGLCESACPEKVI 474
Score = 44.3 bits (103), Expect = 1e-08
Identities = 21/75 (28%), Positives = 36/75 (48%)
Query: 234 NCISKCPKDVLEISEFKVVKTKEDVKAKPEKHCINCGLCVDKCPSNALRFENGKILYDPK 293
+ I++ P+ + E + + VK D+ A C C++ CP++A+ + KI DP
Sbjct: 165 DAIAQLPELIGEFDKPRYVKVNSDICAHHRNGIDGCSRCLNFCPADAIASVDHKIEIDPY 224
Query: 294 TCTLCNTCVKECPQG 308
C +C CP G
Sbjct: 225 LCHGAGSCTNACPTG 239
Score = 43.5 bits (101), Expect = 2e-08
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 321 CVLCELCIKECPEDAISIKERSKFTSIDKEECIACGTCSMVCPNDAITVVIDSLNFSGNK 380
C LC C+ CP A++ ++ C+ CG C CP I++ +NF
Sbjct: 428 CTLCLSCVSTCPTQALTDGGEKPALYFVEQACVQCGLCESACPEKVISLT-PQINFDATA 486
Query: 381 VHSKVIFND----NCVIC 394
S+ N+ C+ C
Sbjct: 487 RQSRQTLNEEAPFECIRC 504
Score = 40.4 bits (93), Expect = 2e-07
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 44 SCITCGTCAKECPTGAIKKN-EYGGYYVNRKLCTGCGICKNVCPIDII----DIREDSTG 98
+C C +C CPT A+ E Y + C CG+C++ CP +I I D+T
Sbjct: 427 NCTLCLSCVSTCPTQALTDGGEKPALYFVEQACVQCGLCESACPEKVISLTPQINFDATA 486
Query: 99 KSYPTGM-------CVMCG 110
+ + C+ CG
Sbjct: 487 RQSRQTLNEEAPFECIRCG 505
Score = 38.5 bits (88), Expect = 6e-07
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 372 DSLNFSGNKVHSKVIFN-DNCVICEKCAIHCPRDVIENTSGHKKVVDRENSYIRTDNDYC 430
D+ N + KV N DNC +C C CP + T G +K + C
Sbjct: 408 DACLSKSNIPYGKVSVNTDNCTLCLSCVSTCPTQAL--TDGGEKPA------LYFVEQAC 459
Query: 431 VKCGLCTIICPNDAI 445
V+CGLC CP I
Sbjct: 460 VQCGLCESACPEKVI 474
Score = 38.1 bits (87), Expect = 8e-07
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 11/60 (18%)
Query: 422 YIRTDNDYCVK-------CGLCTIICPNDAI----DKGEINTEKCEYCSACVNICPTRAI 470
Y++ ++D C C C CP DAI K EI+ C +C N CPT AI
Sbjct: 182 YVKVNSDICAHHRNGIDGCSRCLNFCPADAIASVDHKIEIDPYLCHGAGSCTNACPTGAI 241
Score = 37.0 bits (84), Expect = 2e-06
Identities = 28/130 (21%), Positives = 47/130 (36%), Gaps = 25/130 (19%)
Query: 346 SIDKEECIACGTCSMVCPNDAITVVIDSLNFSGNKVHSKVIFNDNCVICEKCAIHCPRDV 405
S++ + C C +C CP A+T G + + CV C C CP V
Sbjct: 422 SVNTDNCTLCLSCVSTCPTQALT--------DGGEKPALYFVEQACVQCGLCESACPEKV 473
Query: 406 IENTS--GHKKVVDRENSYIRTDNDY-CVKCG-----------LCTIICPNDAIDKGEIN 451
I T + + + + C++CG + ++ + A N
Sbjct: 474 ISLTPQINFDATARQSRQTLNEEAPFECIRCGTPFATQSMVQRMLDVVGGHSAF---SAN 530
Query: 452 TEKCEYCSAC 461
TE+ + CS C
Sbjct: 531 TERLKMCSDC 540
Score = 35.4 bits (80), Expect = 5e-06
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 12/83 (14%)
Query: 153 EFPEPKHVKIVKPAERKLRHSISIDSKKCVECGKCIYLCPKDTIIEAE---MVDG--CTR 207
EF +P++VK+ ++ H ID C +C+ CP D I + +D C
Sbjct: 176 EFDKPRYVKV--NSDICAHHRNGIDG-----CSRCLNFCPADAIASVDHKIEIDPYLCHG 228
Query: 208 CNICNEVCPVDAIEYGQVTENCI 230
C CP AI Y T +
Sbjct: 229 AGSCTNACPTGAISYDLPTPQAL 251
Score = 34.7 bits (78), Expect = 9e-06
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 324 CELCIKECPEDAISIKERSKFTSIDKEECIACGTCSMVCPNDAIT 368
C C+ CP DAI+ + ID C G+C+ CP AI+
Sbjct: 200 CSRCLNFCPADAIASVDHK--IEIDPYLCHGAGSCTNACPTGAIS 242
Score = 33.1 bits (74), Expect = 3e-05
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 447 KGEINTEKCEYCSACVNICPTRAI 470
K +NT+ C C +CV+ CPT+A+
Sbjct: 420 KVSVNTDNCTLCLSCVSTCPTQAL 443
Score = 32.3 bits (72), Expect = 4e-05
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 423 IRTDNDYCVKCGLCTIICPNDAI-DKGE-----INTEKCEYCSACVNICPTRAIRI 472
+ TDN C C C CP A+ D GE + C C C + CP + I +
Sbjct: 423 VNTDN--CTLCLSCVSTCPTQALTDGGEKPALYFVEQACVQCGLCESACPEKVISL 476
Score = 32.0 bits (71), Expect = 6e-05
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 48 CGTCAKECPTGAIKKNEYGGYYVNRKLCTGCGICKNVCPIDII 90
C C CP AI ++ ++ LC G G C N CP I
Sbjct: 200 CSRCLNFCPADAIASVDHK-IEIDPYLCHGAGSCTNACPTGAI 241