Pairwise Alignments

Query, 481 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 290 a.a., NADH:ubiquinone oxidoreductase chain I-like protein from Dechlorosoma suillum PS

 Score = 50.1 bits (118), Expect = 1e-10
 Identities = 56/249 (22%), Positives = 91/249 (36%), Gaps = 49/249 (19%)

Query: 159 HVKIVKPAERKLRHSISIDSK----KCVECGKCIYLCPKDTIIEAEMVDGCTRCNICNEV 214
           ++ + + +  +LR   ++D K     C++CG+C+ +CP   I   ++ DG         V
Sbjct: 49  YLPVARASRTRLRPPGALDEKDFLASCIKCGQCVQVCPVQAIKLGDLTDG-----YGIGV 103

Query: 215 CPVDAIEYGQVTENCILCGNCISKCPKDVL--------------EISEFKVVKTKEDVKA 260
             +DA E  Q  +     G CI  CP   L               ++   ++K KE    
Sbjct: 104 PHIDARE--QACDFSCDAGQCILACPTGALTYDKPGFLAVRPGAHLARLPILKAKEKDPE 161

Query: 261 KPEKHCINCGLCVDKCPSNALRFENGKILYDPKTCTLCNTC-------VKECPQGVRINK 313
                    GL     P   L  +        +      T         K  P      +
Sbjct: 162 PTLNLKERMGLARLAQPQICLAAQGKGFKGQARGAGFKGTMRYMDVDRWKPIPVADHPYE 221

Query: 314 GEFVDGGCVLCELCIKECP-EDAISIKERSKFTSIDK------EECIACGTCSMVCPNDA 366
            E  D       LC+ ECP +DAI +K       + +      E+C+ CG C M+CP +A
Sbjct: 222 RELCD-------LCVTECPIKDAIRLKFVDNGDGVKRAVPEVLEQCVGCGVCEMICPVEA 274

Query: 367 ---ITVVID 372
                +V+D
Sbjct: 275 GGMAAIVVD 283



 Score = 44.7 bits (104), Expect = 4e-09
 Identities = 56/232 (24%), Positives = 78/232 (33%), Gaps = 73/232 (31%)

Query: 38  IDGKAF--SCITCGTCAKECPTGAIKKNEYGGYYVNRKLCTGCGICKNVCPIDIIDIRED 95
           +D K F  SCI CG C + CP  AIK  +         L  G GI      +  ID RE 
Sbjct: 66  LDEKDFLASCIKCGQCVQVCPVQAIKLGD---------LTDGYGI-----GVPHIDAREQ 111

Query: 96  STGKSYPTGMCVMC---GLCTTECP---------YNARLYF------DPSSLKNTKNKML 137
           +   S   G C++    G  T + P         + ARL        DP    N K +M 
Sbjct: 112 ACDFSCDAGQCILACPTGALTYDKPGFLAVRPGAHLARLPILKAKEKDPEPTLNLKERMG 171

Query: 138 MERYS---TIFKMMGK-------------TYEFPEPKHVKIVKPAERKLRHSISIDSKKC 181
           + R +         GK             T  + +    K +  A+      +       
Sbjct: 172 LARLAQPQICLAAQGKGFKGQARGAGFKGTMRYMDVDRWKPIPVADHPYEREL------- 224

Query: 182 VECGKCIYLCPKDTIIEAEMVDG--------------CTRCNICNEVCPVDA 219
             C  C+  CP    I  + VD               C  C +C  +CPV+A
Sbjct: 225 --CDLCVTECPIKDAIRLKFVDNGDGVKRAVPEVLEQCVGCGVCEMICPVEA 274



 Score = 40.8 bits (94), Expect = 6e-08
 Identities = 51/253 (20%), Positives = 86/253 (33%), Gaps = 64/253 (25%)

Query: 216 PVDAIEYGQVTENCILCGNCISKCPKDVLEISE----FKVVKTKEDVKAKPEKHCINCGL 271
           P  A++      +CI CG C+  CP   +++ +    + +     D + +      + G 
Sbjct: 62  PPGALDEKDFLASCIKCGQCVQVCPVQAIKLGDLTDGYGIGVPHIDAREQACDFSCDAGQ 121

Query: 272 CVDKCPSNALRFENGKILYDPKTCTLCNTCVKECPQGVRINKGEFVDGGCVLCELCIKEC 331
           C+  CP+ AL ++    L                           V  G  L  L I + 
Sbjct: 122 CILACPTGALTYDKPGFLA--------------------------VRPGAHLARLPILKA 155

Query: 332 ----PEDAISIKERSKFTSIDKEE-CIACGTCSMVCPNDAITVVIDSLNFSGNKVHSKVI 386
               PE  +++KER     + + + C+A                     F G   +  V 
Sbjct: 156 KEKDPEPTLNLKERMGLARLAQPQICLAA-------QGKGFKGQARGAGFKGTMRYMDVD 208

Query: 387 ---------FNDNCVICEKCAIHCP-RDVI-----ENTSGHKKVVDRENSYIRTDNDYCV 431
                          +C+ C   CP +D I     +N  G K+ V           + CV
Sbjct: 209 RWKPIPVADHPYERELCDLCVTECPIKDAIRLKFVDNGDGVKRAVPEVL-------EQCV 261

Query: 432 KCGLCTIICPNDA 444
            CG+C +ICP +A
Sbjct: 262 GCGVCEMICPVEA 274



 Score = 34.7 bits (78), Expect = 4e-06
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 16/57 (28%)

Query: 430 CVKCGLCTIICPNDAIDKGEI-------------NTEKCEY-CSA--CVNICPTRAI 470
           C+KCG C  +CP  AI  G++               + C++ C A  C+  CPT A+
Sbjct: 75  CIKCGQCVQVCPVQAIKLGDLTDGYGIGVPHIDAREQACDFSCDAGQCILACPTGAL 131



 Score = 28.1 bits (61), Expect = 4e-04
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 437 TIICPNDAIDKGEINTEKCEYCSACVNICPTRAIRI 472
           T + P  A+D+ +     C  C  CV +CP +AI++
Sbjct: 58  TRLRPPGALDEKDF-LASCIKCGQCVQVCPVQAIKL 92



 Score = 26.6 bits (57), Expect = 0.001
 Identities = 54/237 (22%), Positives = 74/237 (31%), Gaps = 70/237 (29%)

Query: 266 CINCGLCVDKCPSNALRFENGKILYD---------PKTCTL---CNTCVKECPQG-VRIN 312
           CI CG CV  CP  A++  +    Y           + C        C+  CP G +  +
Sbjct: 75  CIKCGQCVQVCPVQAIKLGDLTDGYGIGVPHIDAREQACDFSCDAGQCILACPTGALTYD 134

Query: 313 KGEF--VDGGCVLCELCIKEC----PEDAISIKERSKFTSIDKEECIACGTCSMVCPNDA 366
           K  F  V  G  L  L I +     PE  +++KER     + + +               
Sbjct: 135 KPGFLAVRPGAHLARLPILKAKEKDPEPTLNLKERMGLARLAQPQ--------------- 179

Query: 367 ITVVIDSLNFSGNKVHSKVIFNDNCVICEKCAIHCPRDVIENTSGHKKVVDRENSYIRTD 426
           I +      F G                        R      +     VDR       D
Sbjct: 180 ICLAAQGKGFKGQA----------------------RGAGFKGTMRYMDVDRWKPIPVAD 217

Query: 427 NDYCVK-CGLCTIICP-NDAI-----DKGE-------INTEKCEYCSACVNICPTRA 469
           + Y  + C LC   CP  DAI     D G+          E+C  C  C  ICP  A
Sbjct: 218 HPYERELCDLCVTECPIKDAIRLKFVDNGDGVKRAVPEVLEQCVGCGVCEMICPVEA 274