Pairwise Alignments
Query, 481 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2
Subject, 656 a.a., 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F
Score = 53.9 bits (128), Expect = 2e-11
Identities = 76/335 (22%), Positives = 112/335 (33%), Gaps = 69/335 (20%)
Query: 165 PAERKLRHSISIDSKKCVECGKCIYLCPKDTIIEA--EMVDG--CTRCNICNEVCPVDAI 220
P R++ H+ C CG C CP I A D C +C C +VCPVDA+
Sbjct: 245 PWRRRVEHA-------CTACGACARRCPAGAIPAAAPRATDHAECLKCLRCADVCPVDAV 297
Query: 221 EYGQVTENCILCGNCISKCPKDVLEISEFKVVKTKEDVKAKPEKHCINCGLCVDKCPSN- 279
+ ++ K PK + + ++ + V A P+ C + N
Sbjct: 298 RFAFSDVPGVVMPEMQEK-PKQP-DTPDTLAPRSGKAVPAHPDACADACADAASQRAVNG 355
Query: 280 -ALRFENGKILYDP--------KTCTLCNTCVKEC-------------PQGVRINKGEFV 317
A R G + P + L C P+GV G
Sbjct: 356 TAHRKRPGSLSTVPLPPHARQQRRALLAGLAAGACAAALGHAAPALGRPEGVLRPPGALP 415
Query: 318 D----GGCVLCELCIKECPEDAI--------SIKERSKFTSIDKEECI-ACGTCSMVCPN 364
+ CV C LC CP + + ++ S + + C AC C+ CP
Sbjct: 416 EPDFLARCVRCGLCAAACPTNTLQPAWLASGALGMFSPVVTPARGFCDPACHACARACPT 475
Query: 365 DAITVVIDSLNFSGNKVHSKVIFNDNCVI------CEKCAIHCPRDVIENTSGHKKVVDR 418
AI + D F+ K+ + + D+C+ C C CP D I +
Sbjct: 476 TAIRRLADERTFA--KIGTAEVLRDHCLAWAKKKRCLVCDEVCPYDAI--------ALKP 525
Query: 419 ENSYI----RTDNDYCVKCGLCTIICPNDAIDKGE 449
E Y D C CG C CP G+
Sbjct: 526 EPGYTVGVPHVDPARCAGCGFCEKHCPETVQATGQ 560
Score = 45.8 bits (107), Expect = 4e-09
Identities = 33/127 (25%), Positives = 46/127 (36%), Gaps = 38/127 (29%)
Query: 26 CMEVCPTNAIK---------------MIDGKAFSCITCGTCAKECPTGAIKK-------N 63
C CPTN ++ + + F C CA+ CPT AI++
Sbjct: 429 CAAACPTNTLQPAWLASGALGMFSPVVTPARGFCDPACHACARACPTTAIRRLADERTFA 488
Query: 64 EYGGYYVNRKLCTG------CGICKNVCPIDIIDIREDSTGKSYPTGM-------CVMCG 110
+ G V R C C +C VCP D I ++ + Y G+ C CG
Sbjct: 489 KIGTAEVLRDHCLAWAKKKRCLVCDEVCPYDAIALKPE---PGYTVGVPHVDPARCAGCG 545
Query: 111 LCTTECP 117
C CP
Sbjct: 546 FCEKHCP 552
Score = 45.1 bits (105), Expect = 8e-09
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 26 CMEVCPTNAIKMIDGKA--------FSCITCGTCAKECPTGAIKKNEYGGYYVNRKLCTG 77
C +CP A + G+A +C CG CA+ CP GAI + C
Sbjct: 227 CRMLCPAGAAMGLAGRAAPWRRRVEHACTACGACARRCPAGAIP--AAAPRATDHAECLK 284
Query: 78 CGICKNVCPIDII 90
C C +VCP+D +
Sbjct: 285 CLRCADVCPVDAV 297
Score = 40.0 bits (92), Expect = 2e-07
Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 23/134 (17%)
Query: 352 CIACGTCSMVCPNDAIT---VVIDSLNFSGNKVHSKVIFNDNCVICEKCAIHCPRDVIEN 408
C+ CG C+ CP + + + +L V F D C CA CP I
Sbjct: 423 CVRCGLCAAACPTNTLQPAWLASGALGMFSPVVTPARGFCDPA--CHACARACPTTAIRR 480
Query: 409 TSGHKKVVDRENSYIRTDNDYCV------KCGLCTIICPNDAI----DKG------EINT 452
+ + + + D+C+ +C +C +CP DAI + G ++
Sbjct: 481 LADERTFAKIGTAEVL--RDHCLAWAKKKRCLVCDEVCPYDAIALKPEPGYTVGVPHVDP 538
Query: 453 EKCEYCSACVNICP 466
+C C C CP
Sbjct: 539 ARCAGCGFCEKHCP 552
Score = 37.7 bits (86), Expect = 1e-06
Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 17/88 (19%)
Query: 358 CSMVCPNDAITVVIDSLNFSGNKVHSKVIFNDNCVICEKCAIHCPRDVIENTSGHKKVVD 417
C M+CP A ++ +G + C C CA CP I +
Sbjct: 227 CRMLCPAGA------AMGLAGRAAPWRRRVEHACTACGACARRCPAGAIPAAAPRA---- 276
Query: 418 RENSYIRTDNDYCVKCGLCTIICPNDAI 445
TD+ C+KC C +CP DA+
Sbjct: 277 -------TDHAECLKCLRCADVCPVDAV 297
Score = 35.4 bits (80), Expect = 6e-06
Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 397 CAIHCPRDVIENTSGHKKVVDRENSYIRTDNDYCVKCGLCTIICPNDAIDKGE---INTE 453
C + CP +G R + R C CG C CP AI +
Sbjct: 227 CRMLCPAGAAMGLAG------RAAPWRRRVEHACTACGACARRCPAGAIPAAAPRATDHA 280
Query: 454 KCEYCSACVNICPTRAIR 471
+C C C ++CP A+R
Sbjct: 281 ECLKCLRCADVCPVDAVR 298
Score = 35.4 bits (80), Expect = 6e-06
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 17/66 (25%)
Query: 430 CVKCGLCTIICPNDAIDKGEINTEK--------------CE-YCSACVNICPTRAIRIYR 474
CV+CGLC CP + + + + C+ C AC CPT AIR R
Sbjct: 423 CVRCGLCAAACPTNTLQPAWLASGALGMFSPVVTPARGFCDPACHACARACPTTAIR--R 480
Query: 475 TWNEKT 480
+E+T
Sbjct: 481 LADERT 486
Score = 34.3 bits (77), Expect = 1e-05
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 11/62 (17%)
Query: 207 RCNICNEVCPVDAI----EYGQVT-------ENCILCGNCISKCPKDVLEISEFKVVKTK 255
RC +C+EVCP DAI E G C CG C CP+ V + ++
Sbjct: 508 RCLVCDEVCPYDAIALKPEPGYTVGVPHVDPARCAGCGFCEKHCPETVQATGQKAIIIRP 567
Query: 256 ED 257
D
Sbjct: 568 RD 569
Score = 30.8 bits (68), Expect = 1e-04
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 10/48 (20%)
Query: 19 KNKEISKCMEVCPTNAIKMIDGKAFS----------CITCGTCAKECP 56
K K C EVCP +AI + ++ C CG C K CP
Sbjct: 505 KKKRCLVCDEVCPYDAIALKPEPGYTVGVPHVDPARCAGCGFCEKHCP 552
Score = 30.4 bits (67), Expect = 2e-04
Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 19/105 (18%)
Query: 387 FNDNCVICEKCAIHCPRDVIENTSGHKKVVDRENSYIRTDNDYC-VKCGLCTIICPNDAI 445
F CV C CA CP + ++ + + + +C C C CP AI
Sbjct: 419 FLARCVRCGLCAAACPTNTLQPAWLASGALGMFSPVVTPARGFCDPACHACARACPTTAI 478
Query: 446 DK------------GEINTEKC------EYCSACVNICPTRAIRI 472
+ E+ + C + C C +CP AI +
Sbjct: 479 RRLADERTFAKIGTAEVLRDHCLAWAKKKRCLVCDEVCPYDAIAL 523
Score = 30.0 bits (66), Expect = 3e-04
Identities = 28/131 (21%), Positives = 43/131 (32%), Gaps = 12/131 (9%)
Query: 75 CTGCGICKNVCPIDIID---IREDSTGKSYPT-----GMC-VMCGLCTTECPYNA-RLYF 124
C CG+C CP + + + + G P G C C C CP A R
Sbjct: 423 CVRCGLCAAACPTNTLQPAWLASGALGMFSPVVTPARGFCDPACHACARACPTTAIRRLA 482
Query: 125 DPSSLKNTKNKMLMERYSTIFKMMGKTYEFPE--PKHVKIVKPAERKLRHSISIDSKKCV 182
D + ++ + + + E P +KP +D +C
Sbjct: 483 DERTFAKIGTAEVLRDHCLAWAKKKRCLVCDEVCPYDAIALKPEPGYTVGVPHVDPARCA 542
Query: 183 ECGKCIYLCPK 193
CG C CP+
Sbjct: 543 GCGFCEKHCPE 553
Score = 30.0 bits (66), Expect = 3e-04
Identities = 23/98 (23%), Positives = 33/98 (33%), Gaps = 22/98 (22%)
Query: 45 CITCGTCAKECPTGAIKKNEYGGYYVN---------RKLC-TGCGICKNVCPIDII-DIR 93
C+ CG CA CPT ++ + R C C C CP I +
Sbjct: 423 CVRCGLCAAACPTNTLQPAWLASGALGMFSPVVTPARGFCDPACHACARACPTTAIRRLA 482
Query: 94 EDSTGKSYPTGMCV-----------MCGLCTTECPYNA 120
++ T T + C +C CPY+A
Sbjct: 483 DERTFAKIGTAEVLRDHCLAWAKKKRCLVCDEVCPYDA 520
Score = 27.7 bits (60), Expect = 0.001
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 26 CMEVCPTNAIKMIDGKAFS---CITCGTCAKECPTGAIK 61
C CP AI +A C+ C CA CP A++
Sbjct: 260 CARRCPAGAIPAAAPRATDHAECLKCLRCADVCPVDAVR 298