Pairwise Alignments

Query, 481 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 544 a.a., ferredoxin-dependent glutamate synthase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 48.5 bits (114), Expect = 6e-10
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 16/73 (21%)

Query: 389 DNCVICEKCAIHCPRDVIENTSGHKKVVDR--------ENSYI-------RTDNDY-CVK 432
           D C +C +C   CP   IE     K+VV+         +N+Y        RTD  Y C+ 
Sbjct: 26  DTCTLCGRCTSVCPVSAIELAVHRKRVVETTTGLLQKPKNTYSVFHGIRQRTDAAYACIG 85

Query: 433 CGLCTIICPNDAI 445
           C +CT++CPN+AI
Sbjct: 86  CAMCTMVCPNNAI 98



 Score = 47.4 bits (111), Expect = 1e-09
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 203 DGCTRCNICNEVCPVDAIEYGQVTENCILCGNCISKCPKDVLEISEFKVVKTKEDVKAKP 262
           D CT C  C  VCPV AIE     +  +     + + PK+   +  F  ++ + D     
Sbjct: 26  DTCTLCGRCTSVCPVSAIELAVHRKRVVETTTGLLQKPKNTYSV--FHGIRQRTDAAYA- 82

Query: 263 EKHCINCGLCVDKCPSNALR 282
              CI C +C   CP+NA+R
Sbjct: 83  ---CIGCAMCTMVCPNNAIR 99



 Score = 42.0 bits (97), Expect = 5e-08
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 8/84 (9%)

Query: 287 KILYDPKTCTLCNTCVKECPQG---VRINKGEFVDGGCVLCELCIKECPEDAISIKERSK 343
           ++ ++  TCTLC  C   CP     + +++   V+    L +      P++  S+    +
Sbjct: 20  QVEWNKDTCTLCGRCTSVCPVSAIELAVHRKRVVETTTGLLQK-----PKNTYSVFHGIR 74

Query: 344 FTSIDKEECIACGTCSMVCPNDAI 367
             +     CI C  C+MVCPN+AI
Sbjct: 75  QRTDAAYACIGCAMCTMVCPNNAI 98



 Score = 37.7 bits (86), Expect = 1e-06
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 24/74 (32%)

Query: 71  NRKLCTGCGICKNVCPIDIIDIR-------EDSTG-----------------KSYPTGMC 106
           N+  CT CG C +VCP+  I++        E +TG                 ++     C
Sbjct: 24  NKDTCTLCGRCTSVCPVSAIELAVHRKRVVETTTGLLQKPKNTYSVFHGIRQRTDAAYAC 83

Query: 107 VMCGLCTTECPYNA 120
           + C +CT  CP NA
Sbjct: 84  IGCAMCTMVCPNNA 97



 Score = 32.0 bits (71), Expect = 5e-05
 Identities = 21/82 (25%), Positives = 28/82 (34%), Gaps = 30/82 (36%)

Query: 423 IRTDNDYCVKCGLCTIICPNDAID-----KGEINTE------------------------ 453
           +  + D C  CG CT +CP  AI+     K  + T                         
Sbjct: 21  VEWNKDTCTLCGRCTSVCPVSAIELAVHRKRVVETTTGLLQKPKNTYSVFHGIRQRTDAA 80

Query: 454 -KCEYCSACVNICPTRAIRIYR 474
             C  C+ C  +CP  AIR  R
Sbjct: 81  YACIGCAMCTMVCPNNAIRPMR 102



 Score = 27.7 bits (60), Expect = 0.001
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 33 NAIKMIDGKAFSCITCGTCAKECPTGAIK 61
          + I+     A++CI C  C   CP  AI+
Sbjct: 71 HGIRQRTDAAYACIGCAMCTMVCPNNAIR 99