Pairwise Alignments
Query, 481 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2
Subject, 352 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ
Score = 132 bits (332), Expect = 2e-35
Identities = 94/292 (32%), Positives = 133/292 (45%), Gaps = 60/292 (20%)
Query: 205 CTRCNICNEVCPVDAIEYGQVTENCILCGNCISKCPKDVLEISEFKVVKTKEDVKAKPEK 264
C C IC+E+CP AIE G + I G+ PK L+ISE
Sbjct: 32 CVGCGICSEICPTSAIEMGPL--GAIFKGDI--DAPK--LDISE---------------- 69
Query: 265 HCINCGLCVDKCPSNALRFENGKILYDPKTCTLCNTCVKECPQGVRINKG-EFVDGGCVL 323
C+ CG+C CP +A++ ++ + + E PQ +I +G E CVL
Sbjct: 70 KCVLCGMCACACPFDAVKL------------SINDKPITEMPQYPKIKRGIELNQSKCVL 117
Query: 324 CELCIKECPEDAISIK----ERSKFT----SIDKEECIACGTCSMVCPNDAITVVIDSLN 375
CE C CP+ AI ++ ER +I K++C+ CG C+ CP DAI ++ + +N
Sbjct: 118 CEQCELVCPQCAIDVEREVPERKSLVLGEITIKKDDCVLCGICAEYCPADAIELIPNDMN 177
Query: 376 -FSGNKVHSKVIFNDNCVICEKCAIHCPRDVIEN-------TSGHKK--VVDRENSYIRT 425
S N + I D CV C+ C CP + IE S KK +
Sbjct: 178 ALSLNPIADIKIDLDACVYCKVCEKACPHNAIEAICYKCPLASKIKKPELYGEIKGQTNI 237
Query: 426 DNDYCVKCGLCTIICPNDAID-----KGE--INTEKCEYCSACVNICPTRAI 470
D D CV CG C ICP DAI+ +GE I+ C C AC+++CP A+
Sbjct: 238 DKDLCVSCGWCANICPADAIEVEKPFEGELIIDEPACNACGACISVCPCNAL 289
Score = 117 bits (294), Expect = 5e-31
Identities = 87/358 (24%), Positives = 140/358 (39%), Gaps = 108/358 (30%)
Query: 75 CTGCGICKNVCPIDIIDIR--------EDSTGKSYPTGMCVMCGLCTTECPYNARLYFDP 126
C GCGIC +CP I++ + K + CV+CG+C CP++A
Sbjct: 32 CVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDISEKCVLCGMCACACPFDA------ 85
Query: 127 SSLKNTKNKMLMERYSTIFKMMGKTYEFPEPKHVKIVKPAERKLRHSISIDSKKCVECGK 186
+ S K + + ++P K++ I ++ KCV C +
Sbjct: 86 ------------VKLSINDKPITEMPQYP-------------KIKRGIELNQSKCVLCEQ 120
Query: 187 CIYLCPKDTI-IEAEMV--------------DGCTRCNICNEVCPVDAIEYGQVTEN--- 228
C +CP+ I +E E+ D C C IC E CP DAIE N
Sbjct: 121 CELVCPQCAIDVEREVPERKSLVLGEITIKKDDCVLCGICAEYCPADAIELIPNDMNALS 180
Query: 229 -------------CILCGNCISKCPKDVLEI--------SEFKVVKTKEDVKAKP---EK 264
C+ C C CP + +E S+ K + ++K + +
Sbjct: 181 LNPIADIKIDLDACVYCKVCEKACPHNAIEAICYKCPLASKIKKPELYGEIKGQTNIDKD 240
Query: 265 HCINCGLCVDKCPSNALRFEN---GKILYDPKTCTLCNTCVKECPQGVRINKGEFVDGGC 321
C++CG C + CP++A+ E G+++ D C C C+ CP
Sbjct: 241 LCVSCGWCANICPADAIEVEKPFEGELIIDEPACNACGACISVCP--------------- 285
Query: 322 VLCELCIKECPEDAISIKERSKFTSI--DKEECIACGTCSMVCPNDAITVVIDSLNFS 377
C + PE K+ K ++ +++ CI CG C+ CP DA+TV +N +
Sbjct: 286 --CNALVFPQPE-----KQGDKVPNVVVNQDVCILCGACTHSCPVDALTVKRTKINMT 336
Score = 115 bits (288), Expect = 2e-30
Identities = 86/352 (24%), Positives = 135/352 (38%), Gaps = 109/352 (30%)
Query: 44 SCITCGTCAKECPTGAIKKNEYGGYYVNRKLCTGCGICKNVCPIDIIDIREDSTGKSYPT 103
+C+ CG C++ CPT AI+ G I K +DI E
Sbjct: 31 TCVGCGICSEICPTSAIEMGPLG------------AIFKGDIDAPKLDISE--------- 69
Query: 104 GMCVMCGLCTTECPYNARLYFDPSSLKNTKNKMLMERYSTIFKMMGKTYEFPEPKHVKIV 163
CV+CG+C CP++A + S K + + ++P
Sbjct: 70 -KCVLCGMCACACPFDA------------------VKLSINDKPITEMPQYP-------- 102
Query: 164 KPAERKLRHSISIDSKKCVECGKCIYLCPKDTI-IEAEM--------------VDGCTRC 208
K++ I ++ KCV C +C +CP+ I +E E+ D C C
Sbjct: 103 -----KIKRGIELNQSKCVLCEQCELVCPQCAIDVEREVPERKSLVLGEITIKKDDCVLC 157
Query: 209 NICNEVCPVDAIEYGQVTEN----------------CILCGNCISKCPKDVLE------- 245
IC E CP DAIE N C+ C C CP + +E
Sbjct: 158 GICAEYCPADAIELIPNDMNALSLNPIADIKIDLDACVYCKVCEKACPHNAIEAICYKCP 217
Query: 246 -ISEFKVVKTKEDVKAK---PEKHCINCGLCVDKCPSNALRFE---NGKILYDPKTCTLC 298
S+ K + ++K + + C++CG C + CP++A+ E G+++ D C C
Sbjct: 218 LASKIKKPELYGEIKGQTNIDKDLCVSCGWCANICPADAIEVEKPFEGELIIDEPACNAC 277
Query: 299 NTCVKECP-----------QGVRINKGEFVDGGCVLCELCIKECPEDAISIK 339
C+ CP QG ++ C+LC C CP DA+++K
Sbjct: 278 GACISVCPCNALVFPQPEKQGDKVPNVVVNQDVCILCGACTHSCPVDALTVK 329
Score = 111 bits (277), Expect = 4e-29
Identities = 88/319 (27%), Positives = 128/319 (40%), Gaps = 70/319 (21%)
Query: 177 DSKKCVECGKCIYLCPKDTI------------IEAEMVD---GCTRCNICNEVCPVDAIE 221
D CV CG C +CP I I+A +D C C +C CP DA++
Sbjct: 28 DDCTCVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDISEKCVLCGMCACACPFDAVK 87
Query: 222 YG----QVTE----------------NCILCGNCISKCPKDVLEISEFKVVKTKEDVKAK 261
+TE C+LC C CP+ +++ E +V + K V +
Sbjct: 88 LSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQCAIDV-EREVPERKSLVLGE 146
Query: 262 ---PEKHCINCGLCVDKCPSNALRF-----------ENGKILYDPKTCTLCNTCVKECPQ 307
+ C+ CG+C + CP++A+ I D C C C K CP
Sbjct: 147 ITIKKDDCVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLDACVYCKVCEKACPH 206
Query: 308 GVRINKGEFVDGGCVLCELCIK-ECPEDAISIKERSKFTSIDKEECIACGTCSMVCPNDA 366
++ C C L K + PE IK + T+IDK+ C++CG C+ +CP DA
Sbjct: 207 NA-------IEAICYKCPLASKIKKPELYGEIKGQ---TNIDKDLCVSCGWCANICPADA 256
Query: 367 ITVVIDSLNFSGNKVHSKVIFNDNCVICEKCAIHCPRDVIENTSGHKKVVDRENSYIRTD 426
I V F G +I C C C CP + + K+ N + +
Sbjct: 257 IEV---EKPFEG----ELIIDEPACNACGACISVCPCNALVFPQPEKQGDKVPN--VVVN 307
Query: 427 NDYCVKCGLCTIICPNDAI 445
D C+ CG CT CP DA+
Sbjct: 308 QDVCILCGACTHSCPVDAL 326
Score = 103 bits (257), Expect = 9e-27
Identities = 89/320 (27%), Positives = 125/320 (39%), Gaps = 80/320 (25%)
Query: 16 EDCKNKEISKCMEVCPTNAIKM----------IDGKAFS----CITCGTCAKECPTGAIK 61
+DC C E+CPT+AI+M ID C+ CG CA CP A+K
Sbjct: 28 DDCTCVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDISEKCVLCGMCACACPFDAVK 87
Query: 62 KN----------EYG----GYYVNRKLCTGCGICKNVCPIDIIDI-REDSTGKSYPTGM- 105
+ +Y G +N+ C C C+ VCP ID+ RE KS G
Sbjct: 88 LSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQCAIDVEREVPERKSLVLGEI 147
Query: 106 ------CVMCGLCTTECPYNARLYFDPSSLKNTKNKMLMERYSTI---------FKMMGK 150
CV+CG+C CP +A + N N + + + I K+ K
Sbjct: 148 TIKKDDCVLCGICAEYCPADAI-----ELIPNDMNALSLNPIADIKIDLDACVYCKVCEK 202
Query: 151 TYE--------FPEPKHVKIVKPA-ERKLRHSISIDSKKCVECGKCIYLCPKDTI----- 196
+ P KI KP +++ +ID CV CG C +CP D I
Sbjct: 203 ACPHNAIEAICYKCPLASKIKKPELYGEIKGQTNIDKDLCVSCGWCANICPADAIEVEKP 262
Query: 197 IEAEMV---DGCTRCNICNEVCPVDAIEYGQVTEN-------------CILCGNCISKCP 240
E E++ C C C VCP +A+ + Q + CILCG C CP
Sbjct: 263 FEGELIIDEPACNACGACISVCPCNALVFPQPEKQGDKVPNVVVNQDVCILCGACTHSCP 322
Query: 241 KDVLEISEFKVVKTKEDVKA 260
D L + K+ T+ + A
Sbjct: 323 VDALTVKRTKINMTEANAPA 342
Score = 75.1 bits (183), Expect = 4e-18
Identities = 42/140 (30%), Positives = 61/140 (43%), Gaps = 19/140 (13%)
Query: 352 CIACGTCSMVCPNDAITVVIDSLNFSGNKVHSKVIFNDNCVICEKCAIHCPRDVIENTSG 411
C+ CG CS +CP AI + F G+ K+ ++ CV+C CA CP D ++ +
Sbjct: 32 CVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDISEKCVLCGMCACACPFDAVKLSIN 91
Query: 412 HKKVVD-----RENSYIRTDNDYCVKCGLCTIICPNDAID------------KGEINTEK 454
K + + + I + CV C C ++CP AID GEI +K
Sbjct: 92 DKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQCAIDVEREVPERKSLVLGEITIKK 151
Query: 455 --CEYCSACVNICPTRAIRI 472
C C C CP AI +
Sbjct: 152 DDCVLCGICAEYCPADAIEL 171
Score = 48.1 bits (113), Expect = 5e-10
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 20/112 (17%)
Query: 2 IVTDIKKCRTYEECEDCKNKEISKCME------VCPTNAI---KMIDGKAF----SCITC 48
+ + IKK Y E + N + C+ +CP +AI K +G+ +C C
Sbjct: 218 LASKIKKPELYGEIKGQTNIDKDLCVSCGWCANICPADAIEVEKPFEGELIIDEPACNAC 277
Query: 49 GTCAKECPTGAI-------KKNEYGGYYVNRKLCTGCGICKNVCPIDIIDIR 93
G C CP A+ + ++ VN+ +C CG C + CP+D + ++
Sbjct: 278 GACISVCPCNALVFPQPEKQGDKVPNVVVNQDVCILCGACTHSCPVDALTVK 329
Score = 45.8 bits (107), Expect = 2e-09
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 14/68 (20%)
Query: 419 ENSYIRTDNDYCVKCGLCTIICPNDAID--------KGEIN------TEKCEYCSACVNI 464
E ++ D+ CV CG+C+ ICP AI+ KG+I+ +EKC C C
Sbjct: 21 EKRVLKWDDCTCVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDISEKCVLCGMCACA 80
Query: 465 CPTRAIRI 472
CP A+++
Sbjct: 81 CPFDAVKL 88