Pairwise Alignments
Query, 481 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2
Subject, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ
Score = 140 bits (354), Expect = 6e-38
Identities = 87/341 (25%), Positives = 147/341 (43%), Gaps = 57/341 (16%)
Query: 179 KKCVECGKCIYLCPKDTIIEAE--MVDGCTRCNI---CNEVCPV------DAIEYGQVTE 227
K C++C C CP ++E + +V ++C++ C + CPV D Y +
Sbjct: 32 KTCIQCFSCATACPTGALVEKDGKLVFNGSKCDLDGACQKACPVGIKKVDDRFPYSK--G 89
Query: 228 NCILCGNCISKCPKDVLEISEFKVVKTKEDVKAKPE-----KHCINCGLCVDKCPSNALR 282
+C+LC C+ CP +++ + K K K+++ E K C+ CG+CV +CP +A+
Sbjct: 90 HCVLCEKCVDICPAEIISLPG-KAEKPKKEIIIPQEPIAVTKDCVACGVCVPECPVDAIS 148
Query: 283 FENGKILYDPKTCTLCNTCVKECPQGVRINKGEFV-------------DGGCVLCELCIK 329
E+ ++ D C C C + CP G+ + C+ CE C++
Sbjct: 149 IEDIAVI-DTDKCIYCTVCSQTCPWNAIFVAGKLPQKRQKTIKSFTVNEEECIGCEKCVE 207
Query: 330 ECPEDAISIKERSKFTSIDKEECIACGTCSMVCPNDAITVVIDSLNFSGNKVHSKVIFND 389
CP I + + C ACG C CP + I++ ++ + V +
Sbjct: 208 ACPGSMIEYNGEALGVKLPGA-CPACGLCVESCPVEVISLEVEYASAKPVTDEGLVWSEE 266
Query: 390 NCVICEKCAIHCPRDVIE--NTSG----HKKVVDRENSYIRTDNDYCVKCGLCTIICPND 443
C C CAI CP I+ N G KK ++ N + C++CG C + CP
Sbjct: 267 KCAYCGPCAIKCPTGAIKVVNPKGLELPSKKKTEKANEFAM-----CIRCGACAMKCPTG 321
Query: 444 AIDKGEINTEKCEY------------CSACVNICPTRAIRI 472
A+ G++ E EY C CV++CP + + +
Sbjct: 322 ALKMGKMVHEGKEYARVEFSPALCNECGECVDVCPQKTLEL 362
Score = 137 bits (346), Expect = 5e-37
Identities = 116/454 (25%), Positives = 169/454 (37%), Gaps = 111/454 (24%)
Query: 44 SCITCGTCAKECPTGAIKKNEYGGYYVNRKLCTGCGICKNVCPIDIIDIREDSTGKSYPT 103
+C+ C CAK CPT AI+ + K C C C CP + + GK
Sbjct: 10 ACLVCNACAKACPTEAIEIAPF-------KTCIQCFSCATACPTGAL---VEKDGKLVFN 59
Query: 104 GM-CVMCGLCTTECPYNARLYFDPSSLKNTKNKMLMERYSTIFKMMGKTYEFPEPKHVKI 162
G C + G C CP + D FP K
Sbjct: 60 GSKCDLDGACQKACPVGIKKVDD---------------------------RFPYSKG--- 89
Query: 163 VKPAERKLRHSISIDSKKCVECGKCIYLCPKDTIIEAEMVDGCTRCNICNEVCPVDAIEY 222
CV C KC+ +CP + I + G + P + I
Sbjct: 90 -----------------HCVLCEKCVDICPAEII----SLPGKAEKPKKEIIIPQEPIA- 127
Query: 223 GQVTENCILCGNCISKCPKDVLEISEFKVVKTKEDVKAKPEKHCINCGLCVDKCPSNALR 282
VT++C+ CG C+ +CP D + I + V+ T + CI C +C CP NA+
Sbjct: 128 --VTKDCVACGVCVPECPVDAISIEDIAVIDTDK---------CIYCTVCSQTCPWNAI- 175
Query: 283 FENGKI-----------LYDPKTCTLCNTCVKECPQGVRINKGEF----VDGGCVLCELC 327
F GK+ + + C C CV+ CP + GE + G C C LC
Sbjct: 176 FVAGKLPQKRQKTIKSFTVNEEECIGCEKCVEACPGSMIEYNGEALGVKLPGACPACGLC 235
Query: 328 IKECPEDAISIK-ERSKFTSI-------DKEECIACGTCSMVCPNDAITVV-IDSLNFSG 378
++ CP + IS++ E + + +E+C CG C++ CP AI VV L
Sbjct: 236 VESCPVEVISLEVEYASAKPVTDEGLVWSEEKCAYCGPCAIKCPTGAIKVVNPKGLELPS 295
Query: 379 NKVHSKVIFNDNCVICEKCAIHCPRDVIENTSGHKKVVDRENSYIRTDND--YCVKCGLC 436
K K C+ C CA+ CP ++ K+V Y R + C +CG C
Sbjct: 296 KKKTEKANEFAMCIRCGACAMKCPTGALK----MGKMVHEGKEYARVEFSPALCNECGEC 351
Query: 437 TIICPNDAI-----DKGEINTEKCEYCSACVNIC 465
+CP + DK + C C C+ C
Sbjct: 352 VDVCPQKTLELTGDDKMPLK-GYCVMCLKCIEAC 384
Score = 136 bits (342), Expect = 1e-36
Identities = 103/388 (26%), Positives = 159/388 (40%), Gaps = 67/388 (17%)
Query: 4 TDIKKCRTYEECEDCKNKEISKCMEVCPTNAIKMIDGK----AFSCITCGTCAKECPTGA 59
T+ + ++ C C + C CPT A+ DGK C G C K CP G
Sbjct: 23 TEAIEIAPFKTCIQCFS-----CATACPTGALVEKDGKLVFNGSKCDLDGACQKACPVGI 77
Query: 60 IKKNEYGGYYVNRKLCTGCGICKNVCPIDIIDI--REDSTGKSY--------PTGMCVMC 109
K ++ Y ++ C C C ++CP +II + + + K T CV C
Sbjct: 78 KKVDDRFPY--SKGHCVLCEKCVDICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVAC 135
Query: 110 GLCTTECPYNARLYFDPSSLKNTKNKMLMERYSTIFKMMGKTYEFPEPKHVKIVKPAERK 169
G+C ECP +A D + + K Y T+ +T + + +K
Sbjct: 136 GVCVPECPVDAISIEDIAVIDTDKC-----IYCTV---CSQTCPWNAIFVAGKLPQKRQK 187
Query: 170 LRHSISIDSKKCVECGKCIYLCPKDTI------IEAEMVDGCTRCNICNEVCPVDAI--- 220
S +++ ++C+ C KC+ CP I + ++ C C +C E CPV+ I
Sbjct: 188 TIKSFTVNEEECIGCEKCVEACPGSMIEYNGEALGVKLPGACPACGLCVESCPVEVISLE 247
Query: 221 -EYGQV-----------TENCILCGNCISKCPKDVLEI---SEFKVVKTKEDVKAKPEKH 265
EY E C CG C KCP +++ ++ K+ KA
Sbjct: 248 VEYASAKPVTDEGLVWSEEKCAYCGPCAIKCPTGAIKVVNPKGLELPSKKKTEKANEFAM 307
Query: 266 CINCGLCVDKCPSNALRF--------ENGKILYDPKTCTLCNTCVKECPQGVRINKGEF- 316
CI CG C KCP+ AL+ E ++ + P C C CV CPQ G+
Sbjct: 308 CIRCGACAMKCPTGALKMGKMVHEGKEYARVEFSPALCNECGECVDVCPQKTLELTGDDK 367
Query: 317 --VDGGCVLCELCIKEC---PEDAISIK 339
+ G CV+C CI+ C ++A+S+K
Sbjct: 368 MPLKGYCVMCLKCIEACNKTKKEALSLK 395
Score = 128 bits (322), Expect = 3e-34
Identities = 86/301 (28%), Positives = 123/301 (40%), Gaps = 83/301 (27%)
Query: 229 CILCGNCISKCPKDVLEISEFKVVKTKEDVKAKPEKHCINCGLCVDKCPSNALRFENGKI 288
C++C C CP + +EI+ FK CI C C CP+ AL ++GK+
Sbjct: 11 CLVCNACAKACPTEAIEIAPFKT--------------CIQCFSCATACPTGALVEKDGKL 56
Query: 289 LYDPKTCTLCNTCVKECPQGVR--INKGEFVDGGCVLCE--------------------- 325
+++ C L C K CP G++ ++ + G CVLCE
Sbjct: 57 VFNGSKCDLDGACQKACPVGIKKVDDRFPYSKGHCVLCEKCVDICPAEIISLPGKAEKPK 116
Query: 326 --------------------LCIKECPEDAISIKERSKFTSIDKEECIACGTCSMVCPND 365
+C+ ECP DAISI++ ID ++CI C CS CP +
Sbjct: 117 KEIIIPQEPIAVTKDCVACGVCVPECPVDAISIED---IAVIDTDKCIYCTVCSQTCPWN 173
Query: 366 AITVVIDSLNFSGNKVHSKVIFNDNCVICEKCAIHCPRDVIENTSGHKKVVDRENSYIRT 425
AI V + S + + C+ CEKC CP +IE +G V +
Sbjct: 174 AIFVAGKLPQKRQKTIKSFTVNEEECIGCEKCVEACPGSMIE-YNGEALGVKLPGA---- 228
Query: 426 DNDYCVKCGLCTIICPNDAI-------------DKGEI-NTEKCEYCSACVNICPTRAIR 471
C CGLC CP + I D+G + + EKC YC C CPT AI+
Sbjct: 229 ----CPACGLCVESCPVEVISLEVEYASAKPVTDEGLVWSEEKCAYCGPCAIKCPTGAIK 284
Query: 472 I 472
+
Sbjct: 285 V 285
Score = 88.2 bits (217), Expect = 5e-22
Identities = 55/179 (30%), Positives = 81/179 (45%), Gaps = 37/179 (20%)
Query: 318 DGGCVLCELCIKECPEDAISIKERSKFTSIDKEECIACGTCSMVCPNDAITVVIDSLNFS 377
+ C++C C K CP +AI I + CI C +C+ CP A+ L F+
Sbjct: 8 EDACLVCNACAKACPTEAIEI--------APFKTCIQCFSCATACPTGALVEKDGKLVFN 59
Query: 378 GN-----------------KVHSKVIFN-DNCVICEKCAIHCPRDVIENTSGHKK----- 414
G+ KV + ++ +CV+CEKC CP ++I +K
Sbjct: 60 GSKCDLDGACQKACPVGIKKVDDRFPYSKGHCVLCEKCVDICPAEIISLPGKAEKPKKEI 119
Query: 415 VVDRENSYIRTDNDYCVKCGLCTIICPNDAI---DKGEINTEKCEYCSACVNICPTRAI 470
++ +E + D CV CG+C CP DAI D I+T+KC YC+ C CP AI
Sbjct: 120 IIPQEPIAVTKD---CVACGVCVPECPVDAISIEDIAVIDTDKCIYCTVCSQTCPWNAI 175
Score = 69.3 bits (168), Expect = 2e-16
Identities = 45/136 (33%), Positives = 57/136 (41%), Gaps = 29/136 (21%)
Query: 3 VTDIKKCRTYEECEDCKNKEISKCMEVCPTNAIKMIDGKAFS---------------CIT 47
VTD + E+C C C CPT AIK+++ K CI
Sbjct: 256 VTDEGLVWSEEKCAYC-----GPCAIKCPTGAIKVVNPKGLELPSKKKTEKANEFAMCIR 310
Query: 48 CGTCAKECPTGAIKK-------NEYGGYYVNRKLCTGCGICKNVCPIDIIDIREDSTGKS 100
CG CA +CPTGA+K EY + LC CG C +VCP +++ D K
Sbjct: 311 CGACAMKCPTGALKMGKMVHEGKEYARVEFSPALCNECGECVDVCPQKTLELTGDD--KM 368
Query: 101 YPTGMCVMCGLCTTEC 116
G CVMC C C
Sbjct: 369 PLKGYCVMCLKCIEAC 384
Score = 38.9 bits (89), Expect = 3e-07
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 423 IRTDNDYCVKCGLCTIICPNDAIDKGEINTEKCEYCSACVNICPTRAI 470
I D C+ C C CP +AI+ T C C +C CPT A+
Sbjct: 4 ISIQEDACLVCNACAKACPTEAIEIAPFKT--CIQCFSCATACPTGAL 49