Pairwise Alignments

Query, 481 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 205 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score =  105 bits (261), Expect = 2e-27
 Identities = 64/187 (34%), Positives = 87/187 (46%), Gaps = 34/187 (18%)

Query: 181 CVECGKCIYLCPKDTIIEAEMVDG-CTRCNICNEVCPVDAIEYGQVT---ENCILCGNCI 236
           C+ CG C+ +CP + I   +  D  C  C  C  VCPVDAIE  + +   E CI CG C 
Sbjct: 46  CICCGLCVDVCPTNAISVFKFRDIICEHCGACLNVCPVDAIEKNRFSVDSEKCIKCGVCS 105

Query: 237 SKCPKDVLEISEFKVVKTKEDVKAKPEKHCINCGLCVDKCPSNALRFENGKILYDPKTCT 296
             C   +L+ +E  V+   E         C NC LC+ KCP  A+ FE+GKI  + K C 
Sbjct: 106 IFCTIPILK-NEIPVLNVPEVTN-----ECNNCKLCIQKCPQKAISFEDGKISINSK-CN 158

Query: 297 LCNTCVKECPQGVRINKGEFVDGGCVLCELCIKECPEDAISIKERSKFTSIDKEECIACG 356
           LC  CV+ CP                   L   + P+D++    +SK   +D   CI C 
Sbjct: 159 LCLKCVEFCP-------------------LNALKSPKDSL----KSKIIKVDLNSCIFCK 195

Query: 357 TCSMVCP 363
            C  +CP
Sbjct: 196 DCEEICP 202



 Score = 83.6 bits (205), Expect = 6e-21
 Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 35/185 (18%)

Query: 227 ENCILCGNCISKCPKDVLEISEFKVVKTKEDVKAKPEKHCINCGLCVDKCPSNALRFENG 286
           E+CI CG C+  CP + + + +F+ +             C +CG C++ CP +A+  E  
Sbjct: 44  EDCICCGLCVDVCPTNAISVFKFRDI------------ICEHCGACLNVCPVDAI--EKN 89

Query: 287 KILYDPKTCTLCNTCVKECPQGVRINKGEF-------VDGGCVLCELCIKECPEDAISIK 339
           +   D + C  C  C   C   + I K E        V   C  C+LCI++CP+ AIS +
Sbjct: 90  RFSVDSEKCIKCGVCSIFCT--IPILKNEIPVLNVPEVTNECNNCKLCIQKCPQKAISFE 147

Query: 340 ERSKFTSIDKEECIACGTCSMVCPNDAITVVIDSLNFSGNKVHSKVIFND--NCVICEKC 397
           +     SI+  +C  C  C   CP +A+    DSL        SK+I  D  +C+ C+ C
Sbjct: 148 DGK--ISIN-SKCNLCLKCVEFCPLNALKSPKDSLK-------SKIIKVDLNSCIFCKDC 197

Query: 398 AIHCP 402
              CP
Sbjct: 198 EEICP 202



 Score = 82.4 bits (202), Expect = 1e-20
 Identities = 54/182 (29%), Positives = 75/182 (41%), Gaps = 18/182 (9%)

Query: 11  TYEECEDCKNKEISKCMEVCPTNAIKMIDGKAFSCITCGTCAKECPTGAIKKNEYGGYYV 70
           T  E EDC    +  C++VCPTNAI +   +   C  CG C   CP  AI+KN +    V
Sbjct: 39  TNPELEDCICCGL--CVDVCPTNAISVFKFRDIICEHCGACLNVCPVDAIEKNRFS---V 93

Query: 71  NRKLCTGCGICKNVCPIDIIDIREDSTGKSYPTGMCVMCGLCTTECPYNARLYFDPSSLK 130
           + + C  CG+C   C I I+            T  C  C LC  +CP  A  + D     
Sbjct: 94  DSEKCIKCGVCSIFCTIPILKNEIPVLNVPEVTNECNNCKLCIQKCPQKAISFEDGKISI 153

Query: 131 NTKNKMLMERYSTIFKMMGKTYEFPEPKHVKIVKPAERKLRHSISIDSKKCVECGKCIYL 190
           N+K  + +           K  EF     +K   P +      I +D   C+ C  C  +
Sbjct: 154 NSKCNLCL-----------KCVEFCPLNALK--SPKDSLKSKIIKVDLNSCIFCKDCEEI 200

Query: 191 CP 192
           CP
Sbjct: 201 CP 202



 Score = 78.2 bits (191), Expect = 2e-19
 Identities = 52/177 (29%), Positives = 78/177 (44%), Gaps = 21/177 (11%)

Query: 295 CTLCNTCVKECPQGVRINKGEFVDGGCVLCELCIKECPEDAISIKERSKFTSIDKEECIA 354
           C  C  CV  CP    I+  +F D  C  C  C+  CP DAI   E+++F S+D E+CI 
Sbjct: 46  CICCGLCVDVCPTNA-ISVFKFRDIICEHCGACLNVCPVDAI---EKNRF-SVDSEKCIK 100

Query: 355 CGTCSMVCPNDAITVVIDSLNFSGNKVHSKVIFNDNCVICEKCAIHCPRDVIENTSGHKK 414
           CG CS+ C    +   I  LN             + C  C+ C   CP+  I    G   
Sbjct: 101 CGVCSIFCTIPILKNEIPVLNVPE--------VTNECNNCKLCIQKCPQKAISFEDGKIS 152

Query: 415 VVDRENSYIRTDNDYCVK-CGLCTIICPNDAIDKG--EINTEKCEYCSACVNICPTR 468
           +  + N  ++     CV+ C L  +  P D++     +++   C +C  C  ICP +
Sbjct: 153 INSKCNLCLK-----CVEFCPLNALKSPKDSLKSKIIKVDLNSCIFCKDCEEICPVK 204



 Score = 74.3 bits (181), Expect = 3e-18
 Identities = 50/154 (32%), Positives = 69/154 (44%), Gaps = 29/154 (18%)

Query: 321 CVLCELCIKECPEDAISIKERSKFTSIDKEECIACGTCSMVCPNDAITVVIDSLNFSGNK 380
           C+ C LC+  CP +AIS+    KF  I    C  CG C  VCP DAI    +   FS   
Sbjct: 46  CICCGLCVDVCPTNAISV---FKFRDII---CEHCGACLNVCPVDAI----EKNRFS--- 92

Query: 381 VHSKVIFNDNCVICEKCAIHCPRDVIENTSGHKKVVDRENSYIRTDNDYCVKCGLCTIIC 440
                + ++ C+ C  C+I C   +++N      V +  N         C  C LC   C
Sbjct: 93  -----VDSEKCIKCGVCSIFCTIPILKNEIPVLNVPEVTNE--------CNNCKLCIQKC 139

Query: 441 PNDAI--DKGEIN-TEKCEYCSACVNICPTRAIR 471
           P  AI  + G+I+   KC  C  CV  CP  A++
Sbjct: 140 PQKAISFEDGKISINSKCNLCLKCVEFCPLNALK 173



 Score = 65.1 bits (157), Expect = 2e-15
 Identities = 43/136 (31%), Positives = 58/136 (42%), Gaps = 40/136 (29%)

Query: 345 TSIDKEECIACGTCSMVCPNDAITVVIDSLNFSGNKVHSKVIFNDNCVICEKCAI---HC 401
           T+ + E+CI CG C  VCP +AI+V                 F    +ICE C      C
Sbjct: 39  TNPELEDCICCGLCVDVCPTNAISV-----------------FKFRDIICEHCGACLNVC 81

Query: 402 PRDVIENTSGHKKVVDRENSYIRTDNDYCVKCGLCTIICPNDAIDKGEIN-------TEK 454
           P D I            E +    D++ C+KCG+C+I C    I K EI        T +
Sbjct: 82  PVDAI------------EKNRFSVDSEKCIKCGVCSIFC-TIPILKNEIPVLNVPEVTNE 128

Query: 455 CEYCSACVNICPTRAI 470
           C  C  C+  CP +AI
Sbjct: 129 CNNCKLCIQKCPQKAI 144



 Score = 31.2 bits (69), Expect = 3e-05
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 453 EKCEYCSACVNICPTRAIRIYR 474
           E C  C  CV++CPT AI +++
Sbjct: 44  EDCICCGLCVDVCPTNAISVFK 65